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Binary fission
A sexual process of reproduction in which one cell divides to form two daughter cells.
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Generation Time
Time it takes for the number of cells in a population to double...the doubling time
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Biofilm
Polymer-encased microbial community
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Extracellular polymeric substances (EPS)
Are high-molecular weight compounds secreted by microorganisms into their environment.
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Aseptic technique
Use of specific methods and sterile materials to exclude contaminating microbes from an environment.
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Colony
A distinct mass of cells arising from a single cell.
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Agar
Polysaccharide extracted from marine algae that is used to solidify microbiological media.
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Petri Dish
Two part dish of glass or plastic often used to contain medium solidified with agar on which bacteria are grown.
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Exponential or log-phase growth
In bacterial growth curve, stage in which cells multiply exponentially; log phase
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Primary and secondary metabolite production
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Psychrophile
Microorganism that grows best between -5 and 15 degrees C
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Mesophile
Bacteria that grow most rapidly at temperatures between 20 and 45 degrees C.
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Thermophile
Organism with an optimum growth temperature between 25-70 degrees C.
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Obligate aerobe
Organisms that require O2 for growth
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Obligate anaerobe
Organisms that cannot multiply if O2 is present
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Facultative anaerobe
Organism that grows best in the presence of oxygen, but can grown without it also.
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Neutrophile (PH)
Organisms that can live and multiply within the range of pH5 to pH8 (pH7)
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Acidophile (PH)
Organisms that grow optimally at a pH below 5.5
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Alkalophile (PH)
Organisms that grow optimally at a pH above 8.5
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Halotolerant
Organisms that can grow in relatively high salt concentations.
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Halophile
Organism that prefers or requires a high salt medium to grow.
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Complex media
Medium for growing bacteria that has some ingredients of variable chemical composition.
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Chemically defined Media
A culture medium composed of exact quantities of pure chemicals; generally used for scientific experiments when nutrients must be precisely controlled.
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Selective Media
Culture medium that inhibits the growth of certain microorganisms and therefore favors the growth of desired microorganisms.
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Differential Media
Cuture media that contain certain ingredients such as sugars in combination with pH indicators
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Fastidious
Exacting; refers to organisms that require growth factors.
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Germicide
Agent that kills microorganisms and inactivates viruses.
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Bacteriocidal agent
Kills bacteria
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Preservation
The process of inhibiting the growth of microorganisms in products to delay spoilage.
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Pasteurization
Process of heating food or other substances under controlled conditions to kill pathogens and reduce the total number of microorganisms without damaging the substance.
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Decontamination
Treatment to reduce the number of pathogens to a level considered to be safe.
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Sanitization
To treat and item to reduce the microbial population to a level that meets accepted health standards.
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Antiseptics
A disinfectant that is non-toxic enough to be used on skin.
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Disinfection
Process of reducing or eliminating pathogenic microorganisms or viruses in or on a material so that they are no longer a hazard.
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Disinfectant
A chemical used to destroy many microorganisms and viruses.
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Sterilization
The process of destroying or removing all microorganisms and viruses through physical or chemical means.
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Sterile
Completely free of all microorganisms and viruses; an absolute form
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Sterilant
A chemical used to destroy all microorganisms and viruses in a product, rendering it sterile.
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D-value
Abbreviation for the decimal reduction time.
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Non-critical instruments
Medical instruments and surfaces such as stethoscopes and countertops that only come into contact with unbroken skin.
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Semi-critical instruments
Medical instruments such as endoscopes that come into contact with mucous membranes, but do not penetrate the body tissues.
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Critical instuments
Medical instruments such as needles and scalpels that come into direct contact with body tissue.
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Terminal cleaning
Describes a cleaning method used in healthcare environments to control the spread of infections.
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Lord Lister
Father of modern antisepsis.
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Catabolism
Cellular processes that harvest the energy released during the breakdown of compounds such as glucose, using it to synthesize ATP.
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Anabolism
Cellular processes that synthesize and assemble the subunits of macromolecules, using the energy of ATP; biosynthesis
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Metabolism
Sum total of all the enzymatic chemical reactions of a cell.
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Potential energy
Stored energy; it can exist in a variety of forms including chemical bonds, a rock on the top of a hill, and water behind a dam
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Kinetic Energy
Energy of motion
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Enzyme
A protein that functions as a catalyst, speeding up a biological reaction.
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Metabolic pathway
Series of sequential chemical reactions
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Substrate
Substance on which an enzyme acts to form products. Also can be a surface on which an organism will grow.
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Substrate-level phosphorylation
synthesis of ATP using the energy released in a energy-releasing chemical reaction during the breakdown of the energy source.
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Active Site
Site to an enzyme to which the substrate binds; also known as the catalytic site.
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enzyme-substrate complex
Transient form of an enzyme bound to its substrate as the enzyme converts the substrate into a product.
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Co-factor
Non-protein component requires for the activity of some enzymes.
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Oxidative phosphorylation
Synthesis of ATP using the energy of a proton motive force created by harvesting chemical energy.
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Precursor metabolities
Metabolic intermediates that can be either used to make the subunits of macromolecules or oxidized to generate ATP.
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Fermentation
Metabolic process that stops short of oxidizing glucose or other organic intermediate such as pyruvate or a derivative as a terminal electron acceptor.
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Photosystem
Protein complexes within which chlorophyll and other light-gathering pigments are organized.
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The Calvin Cycle
Is the reverse of TCA- it takes all those "free" sunlight generated ATP's and NADPH2+ and adds CO2 to simple sugars to make more.
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Antiparallel
Describes opposing orientations of the two strands of DNA in the double helix.
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Anti-codon
Sequence of these nucleotides in a tRNA molecule that is complementary to a codon in mRNA.
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Activator
In gene regulation, a protein that enhances the ability of RNA polymerase to initiate transcription.
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Bi-directional replication
a type of dna replication where replication is moving along in both directions from the starting point. This creates two replication forks, moving in opposite directions.
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Replication
The process of duplicating or producing an exact copy of a polynucleotide strand such as DNA.
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Transcription
Process of transferring genetic information coded in DNA into messenger RNA (mRNA)
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Translation
Process by which genetic information in the messenger RNA directs the order of amino acids in protein.
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Complementarity
In DNA structure, the nucleobases that characteristically hydrogen bond to one another; A is complementary to T and G is complementary to C
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Hydrogen bonds
Weak attraction between a positively charged hydrogen atom of one compound and a negatively charged atom of another compound
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Messenger RNA (mRNA)
Single stranded RNA that is translated to make protein.
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Ribosomal RNA (rRNA)
Type of RNA present in ribosomes.
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Transfer RNA (tRNA)
Type of RNA that delivers the appropriate amino acid to the ribosome during translation.
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DNA polymerase
Enzymes that synthesize DNA; they use on strand as a template to make the complementary strand.
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Replication Fork
In DNA synthesis, the site at which the double helix is being unwound to expose the single strands that can function as templates.
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Helicase
Enzyme that unwinds the DNA helix ahead of the replication fork.
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Okazaki fragments
Nucleic acid fragment synthesized as a result of the discontinuous replication of the lagging strand of DNA.
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DNA ligase
Enzyme that forms covalent bonds between adjacent fragments of DNA
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Gene
The functional unit of a genome.
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Genome
Complete set of genetic information in a cell.
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Promoter
Nucleotide sequence to which RNA polymerase binds to initiate transcription.
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Operator
Region located immediately downstream of a promoter to which a repressor can bind.
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Terminator
In transcription, a DNA sequence that stops the process.
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Ribosome binding site
Sequence of nucleotides in bacterial mRNA to which a ribosome binds.
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Codon
Set of three adjacent nucleotides that encode either an amino acid or the termination of the polypeptide.
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Anti-codon
Sequence of three nucleotides in a tRNA molecule that is complementary to a codon in mRNA.
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Start Codon
Codon at which translation is initiated;in prokaryotes, typically the first AUG after a ribosome binding site.
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Stop codon
Codon that does not code for an amino acid and is not recognized by a tRNA; signals the end of the polypedtide chain.
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Reading frame
Grouping of nucleotides in sequential triplets; an mRNA molecule has three possible reading frames.
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Quorum sensing
Communication between bacterial cells by means of small molecules, permitting the cells to sense the density of cells.
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Two-component regulatory system
Mechanism of gene regulation that uses a sensor and a response regulator.
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Inducer
An agent capable of activating specific genes.A molecule that inhibits the action of the repressor of an operon, preventing it from freely binding with the operator gene and disabling its function.
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Repressor
Protein that binds to the operator site and prevents transcription.
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Corepressor
Molecule that binds to an inactive repressor, thereby allowing it to function as a repressor.
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pH
- pH scale varies by a factor of 10
- pH is a logarithmic measurement of hydrogen ion concentration on scale from 0-14 that indicates the acidity or alkalinity of a solution
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Monosaccharides
Deoxyribose is missing one oxygen
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