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Organic molecules
These are grouped into families (functional classes) according to the functional group(s) they contain.
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Alkanes
These are the family (functional class) with no functional group.
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Functional Groups
•Each F.G. has specific properties and reactivity.
•Organic compounds that contain the same functional group behave similarly.
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Heteroatom
Any atom other than carbon and hydrogen
•Common: O, N, S, F, Cl, Br, I
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Functional Groups
•F.G. is the reactive part of an organic molecule
-
R is usually used to represent the Rest of the molecule.
R is generic – it could be anything.
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Alkenes
•Alkenes contain at least one C-C double bond.
- •C atoms in a double bond are closer together than they are in a single bond.
- •Double bonds are stronger than single bonds.
–The second bond is weaker than the first.
–Alkenes are more reactive than alkanes.
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β-carotene
An alkene used by the body to produce vitamin A.
–Found in carrots and sweet potatoes
•Fatty acids and cholesterol also contain alkenes.
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Alkynes contain at least one C-C triple bond.
•C atoms in a triple bond are even closer than they are in a double bond.
- •Triple bonds are stronger than double bonds.
- –Alkynes are even more reactive than alkenes.
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Alkynes
•Rare in nature because they are so reactive.
•Poison produced by poison dart frog (histrionicotoxin) contains two alkyne functional groups.
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Aromatic compounds
•Aromatic compounds – contain “delocalized” electrons
--Called “aromatic” because many of the first ones discovered had pleasant odors
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Benzene
•Benzene – a simple aromatic compound
- •Appears to have alternating double
- bonds
•We would expect this to be a reactive compound.
•We would expect three bonds to be shorter, three to be longer.
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Arenes
- •In reality, this molecule is very stable.
- –Not very reactive.
•All bonds are equal in length.
•This is because the “double bond” e- are delocalized – they are shared equally by every C-C bond in the molecule.
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Aromaticity
•Unsaturated cyclic compounds which are unusually stable are said to exhibit aromaticity.
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Arenes
•Arenes – the functional class whose functional group is the benzene ring (sometimes referred to as a phenyl group when it is inside a larger molecule)
•Unreactive group of unsaturated hydrocarbons.
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PAHs
•Polycyclic aromatic hydrocarbons (PAHs) are molecules that contain two or more phenyl groups.
- •Typically formed when organic matter (e.g., leaves) is burned.
- –Tobacco smoke contains several.
–Many have been shown to be carcinogenic.
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Arenes
•Arenes – the functional class whose functional group is the benzene ring (sometimes referred to as a phenyl group when it is inside a larger molecule)
•Unreactive group of unsaturated hydrocarbons.
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Aromatics
•Aromatic compounds are also major components of plastics and many types of pharmaceuticals.
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Section 4.5: Isomerism in Organic Compounds, Part 1
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Structural isomers
•Structural isomers – two or more compounds with the same molecular formula, but different connectivity
•Not all organic compounds are straight chains.
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Structural Isomers
•The simplest alkane that has a structural isomer: C4H10
•Both structures contain 4 C and 10 H, but are connected differently.
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Branched-Chain Alkanes
•Alkanes that do not have all their carbon atoms connected in a single continuous chain are called branched-chain alkanes.
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Conformational Isomers
•Conformational isomers – isomers that differ ONLY by rotation around one or more bonds
•Rotations occur ONLY around single bonds.
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Conformational Isomers
•Same connectivity, different arrangements (“conformations”)
•Both structures represent the same molecule
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Structural isomers
•Structural isomers represent different molecules!
–Different connectivity.
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Conformational isomers
•Conformational isomers represent the same molecule!
–Same connectivity, different appearance.
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Organic Nomenclature
•An easy way to determine if two compounds are structural or conformational isomers is to systematically name each compound.
- –Structural isomers > different names; they are different molecules.
- –Conformational isomers >same name; same molecule.
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Parent Chain
1.Find the longest, continuous chain of carbons atoms. This is called the parent chain.
Name the parent chain according to the straight-chain alkane names (methane, ethane, propane, etc.).
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Simple Organic Nomenclature
3 C à “propane”
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Alkyl Groups
2. Identify the groups bonded to the main chain (ignore hydrogen). These are substituents. In the case of branched-chain alkanes, they are called alkyl groups.
Name the alkyl groups according to alkane naming rules, changing the –ane to –yl (methyl, ethyl, propyl, etc.)
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Simple Organic Nomenclature
3. Number the parent chain starting at the end that puts substituents on carbons with the smallest numbers possible.
-
Simple Organic Nomenclature
-
4. Assign a number to each substituent based on location
List substituents in alphabetical order at the beginning of the name. Separate numbers and words in the name by a dash.
-
Simple Organic Nomenclature
• 3 C à Propane
• Methyl group on carbon #2
2-methylpropane
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Simple Organic Nomenclature
NOTE: If more than one substituent of the same type is present, indicate this by using the prefixes di-, tri-, and tetra-, but ignore these prefixes when alphabetizing. For example, two methyl groups on a parent chain would be named dimethyl.
-
Simple Organic Nomenclature
2-methylpropane
 - butane
Different names > Structural Isomers
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Halogens
•Group 7A elements = Halogens
- •Halogens can be substituents on alkane chains
- –Alkanes with halogen substituents are called haloalkanes or alkyl halides.
-
Halogen substituents
- •Halogen substituents: replace –ine with –o.
- –Fluoro, chloro, bromo, iodo, astato
•Rules for naming haloalkanes are the same as those for naming branched-chain alkanes.
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Cycloalkanes
•The rules are similar, but not identical, to those for naming branched-chain alkanes.
- 1.The ring serves as the parent name as long as it has more C than any substituent.
- –Remember: Cyclopropane, cyclobutane, cyclopentane, etc.
2.As before, identify the substituents.
3. Number the C in the ring. C 1 will ALWAYS have a substituent.
- 4. Assign numbers to the substituents.
- –On a ring with a single substituent, that subst. is assumed to be on C 1, and the 1 is implied and need not be listed.
- –When more than one subst. is present, number the ring to give the lowest possible subst. numbering.
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Section 4.6: Isomerism in Organic Compounds, Part 2
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Stereoisomers
•Stereoisomers – compounds differing only in the arrangement of their atoms in space
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Cis-Trans Stereoisomers in Cycloalkanes
- •C atoms in cycloalkanes form 4 bonds.
- –Structure: Tetrahedral
•One bond in front (out of page)
•One bond behind (into page)
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Cis-Trans Stereoisomers in Cycloalkanes
•Drawing: - –Bond in front: solid wedge
- –Bond behind: dashed wedge
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Cis-Trans Stereoisomers in Cycloalkanes
- •Cycloalkanes: no bond rotation
- –Leads to two distinct sides of the molecule
• Notice the wedge bonds in the ring itself.
-
Cis-trans stereoisomers
•Cis-trans stereoisomers – differ only in the position of two substituents on a ring or double bond
-
Cis & Trans
- •Cis- - substituents on the same side
- •Trans- - substituents on opposite sides
-
Cis-Trans Stereoisomers in Cycloalkanes
Trans-1,2-dimethylcyclopentane
Cis-1,2-dimethylcyclopentane
-
Cis-Trans Stereoisomers in Alkenes
•As with cycloalkanes: no bond rotation - –Leads to two distinct sides of the molecule
-
Chiral center
•Chiral center – A carbon atom with four different atoms or groups attached to it
-
Enantiomers
- •Enantiomers – nonsuperimposable mirror images of one another
- –Always have at least one chiral center
-
-
-
Identifying Chiral Centers
•Place an asterisk next to the chiral carbon atom(s) in the following compound:
-
Identifying Chiral Centers
•“Chiral center” = C atom w/ 4 different groups
•More than 1 H? Not chiral.
-
Identifying Chiral Centers
•C atom w/ 2 methyl groups? Not chiral.
-
Identifying Chiral Centers
•C with four different groups? Chiral!
-
Identifying Chiral Centers
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Consequences of Chirality
- •Different enantiomers have different effects.
- •Chemical receptors have specific shapes
–Only one enantiomer can fit into a given receptor.
–Like trying to put your left-hand into a right-handed baseball glove
•Sometimes, one enantiomer is effective, and the other has no effect.
-
L-Dopa
•L-Dopa
–One enantiomer is used as a Parkinson’s treatment.
–The other has no biological effect.
-
Ibuprofen
•Ibuprofen
–Active ingredient in Advil
–Non-steroidal, anti-inflammatory drug (NSAID)
–One enantiomer is active.
–Other enantiomer is converted to the active one by your body
•Sometimes, one enantiomer is beneficial, while the other is harmful.
-
Thialidomide
•Thialidomide
–Anti-morning-sickness drug
–One enantiomer treats morning sickness
- –The other is teratogenic – it causes
- birth defects.
•Drug was originally sold as a 50:50 mixture of both. Many babies were born with shortened arms or legs, and sometimes no limbs at all.
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