-
chemistry
the science that deals with the structure of matter
-
matter
anything that takes up space and has mass
-
mass
the amount of material in matter
-
atoms
the smallest stable units of matter
-
proton
positively charged subatomic particle in the nucleus of an atom
-
neutron
neutrally charged subatomic particle in the nucleus of an atom
-
electron
a negatively charged subatomic particle that travels around the nucleus (weighs much less)
-
atomic number
number of protons in an atom
-
electron shell
shell surrounding the nucleus of an atom (2, 8, 8.....
-
element
a pure substance composed of atoms of only one kind
-
isotopes
atoms of the same element whose nuclei contain the same number of protons, but different numbers of neutrons
-
mass number
the total number of protons and neutrons in the nucleus
-
atomic weight
the actual mass of an atom, measured in daltons or atomic mass units (amu)
-
unstable atoms
unfilled energy levels, they will react with other atoms, usually in ways that give them full outer electron shells
-
stable atoms
filled outermost energy level are stable and therefore do not readily react with other atoms
-
molecule
any chemical structure consisting of atoms held together by covalent bonds
-
compound
a pure chemical substance made up of atoms of two or more different elements, regardless of the type of bonding joining them
-
ions
atoms or molecules that carry an electric charge
-
cation
ion with a positive charge
-
anion
ion with a negative charge
-
ionic bond
chemical bonds created by the electrical attraction between anions and cations
-
covalent bonds
the sharing of electrons between two atoms to complete their outer shell of electrons
-
single covalent bond
sharing of one pair of electrons
-
double covalent bond
sharing of two pair of electrons
-
nonpolar covalent bond
equal sharing of the electrons
-
polar covalent bond
unequal sharing of the electrons, creating a polar (charged) ends ex) H2O
-
free radical
an ion or molecule with unpaired electrons in its outermost shell (often unstable, reactive, and destructive)
-
water; formed by polar covalent bonds
O attracts H's electrons more strongly than H does (O becomes slightly/partially negative; H becomes slightly/partially positive)
-
hydrogen bond
a weak bond with a hydrogen atom, too weak to form its molecules but can change shape and pull molecules together (protein and dna) and the properties of water (surface tension)
-
chemical reactions occur when...
bonds are broken, atoms are rearranged, and new bonds are formed
-
-
-
metabolism
the sum total of all the chemical reactions occurring in the body at any given moment
-
work
the movement of an object (matter) or change in its physical structure
-
energy
the capacity to perform work
-
kinetic energy
is the energy of motion - energy that can be transferred to another object and perform work
-
potential energy
- is stored energy - energy that has the potential to do work due to the
- - position of matter (up high)
- - physical structure of matter (a compressed spring)
- - chemical structure of matter (bonds)
-
4 types of chemical reactions
- - decomposition or catabolic
- - synthesis or anabolic
- - exchange
- - reversible
-
decomposition or catabolic reactions
breaking molecules into smaller fragments (digestion); often require water to break covalent bonds (hydrolysis) and release energy (exergonic)
-
synthesis or anabolic reactions
assembling smaller molecules into larger ones (muscle growth); often remove water as covalent bonds are formed (dehydration or condensation) and require energy input (endergonic)
-
exchange reaction
shuffle parts of the reactants to make new products
-
reversible
at equilibrium, the rates of the opposing reactions are equal (in balance) - depends on the activation energy to go back and forth
-
activation energy
the amount of energy required to start a reaction
-
enzymes
a protein that promotes chemical reactions by lowering the activation energy requirements
-
inorganic compounds
- not primarily made of C and H
- - carbon dioxide
- - oxygen
- - water
- - inorganic acids, bases, and salts
-
4 physiological things that depend on water
- -solubility - water dissolves most charged or polar molecules
- -reactivity - chemical reactions occur in water
- -high heat capacity - water will absorb and release a lot of energy (heat) before changing temperature
- -lubrication - there is little friction between water molecules
-
molarity
the concentration of a solute in moles/L
-
mole
the weight (in grams) of a substance that is equal to its molecular weight
-
pH
- pH = -log[H+]
- the negative logarithm of the hydrogen ion concentration in moles per liter
-
-
-
-
acid
any solute that dissociates in solution and releases hydrogen ions (proton donor)
-
base
solute that removes hydrogen ions from a solution (proton acceptor), often by releasing OH-
-
salt
an ionic compound whose cation is not H+ and whose anion is not OH-
-
buffer
compounds that stabilize the pH of a solution by removing or replacing hydrogen ions
-
buffer systems
maintain the pH of body fluids, consists of a weak acid and its salt (weak base), releases or removes hydrogen ions in solution ex) carbonic acid-bicarbonate buffer system; carbonic acid functions as a weak acid and bicarbonate functions as a weak base
-
organic compounds
- primarily composed of C and H and usually O
- - carbohydrates
- - lipids
- - proteins
- - nucleic acids
- - high energy compounds
-
lipids: make, general function, 5 classes
- - C, H, O, significantly less O than carbo
- - concentrated energy storage, cell membrane, chemical messengers (hormones)
- - 5classes: fatty acids, eicosanoids, glycerides, steroids, phospholipids/glycolipids
-
fatty acid: made of, function
- head: carboxylic acid group -COOH
- tail: long hydrocarbon chain
- saturated, unsaturated, mono, poly
- function: stored energy source
-
eicosanoids
- derived from arachindonic acid
- chemical messenger (local hormones)
-
triglycerides
- 1 glycerol and 3 fatty acids
- function: concentrated stored energy, thermal insulation, protection
-
steroids
- cholesterol and its derivatives
- - large unique 4 ring structures
- function: hormones (sex hormones, corticosteroids, calcitriol), membrane structure, digestion
-
phospholipids and glycolipids
- have hydrophilic heads and hydrophobic tails
- function: form cell membranes, form micelles (droplets) in aqueous solutions
-
protein
- 3D molecules of C,H,O,N, and some S or P
- - their specific shapes are vital to performing specific, essential functions
- function:
- - support (collagen, keratin)
- - movement (actin, myosin)
- - transport (hemoglobin)
- - buffering (plasma proteins)
- - metabolic regulation (enzymes)
- - coordination/control (hormones)
- - defense (antibodies, clotting proteins)
- ect...............
-
amino acids contain.....
central C, an H, an amino group, a carboxylic acid group, and a variable R group, which differentiates the amino acids types
-
4 levels of protein structure
- 1. primary structure: the linear sequence of amino acids in a polypeptide
- 2. secondary structure: the local folding of parts of the polypeptide (alpha helix or pleated sheet)
- 3. tertiary structure: coiling/folding of the entire molecule into an overall 3D shape
- 4. quaternary structure: the interactions between two or more polypeptides to form a larger protein complex
-
nucleic acids
- contain C,H,O,N,P
- - store and process info inside cells
- - made of chains of nucleotides
- - sugar and phosphate backbone with nitrogenous bases attached to the sugars
-
2 classes of nucleic acids
- - ribonucleic acid (RNA)
- - single stranded
- - 3 types
- - messenger RNA (mRNA)
- - transfer RNA (tRNA)
- - ribosomal RNA (rRNA)
- - deoxyribonucleic acid (DNA)
- - the genetic code for protein synthesis and inherited characteristics
- - double stranded with complementary base pairs A-T C-G
-
nucleotide
a pentose sugar + phosphate group + a nitrogenous base
-
purines and pyrimidines
- purines: "A" adenine and "G" guanine
- pyrimidines: "C" cytosine
- "T" thymine (dna only)
- "U" uracil (rna only)
-
high energy compounds
store cellular energy in high energy bonds for quick release to meet immediate energy demands ex) ATP
-
adenosine triphosphate (ATP)
made by adding a phosphate group to ADP, can be reversed with help of the enzyme APTase
-
ATPase formula
ADP + P + energy <--> ATP + H2O
|
|