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spontaneous generation
suggests that animals such as worms can arise spontaneously from non-living materials.
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Pasteur and swan-neck flask
organisms from the air settle in the bends and sides of the swan-neck flask. didnt touch the fluid, only when the flask was tipped would it touch bacteria.
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Redi
1st to challenge spontaneous generation. proved that maggots do not arise from rotten meat
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Tyndall and Cohn
Tyndall recognized there were heat-resistant microorganisms. then Cohn discovered (endospores).
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bioremediation
using microbes to clean up the enviornment
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genetic engineering
altering an organisms genetic information by changing its nucleic acid sequence.
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emerging diseases
diseases that have increased in incidence in the past 2 decades. TSS, SARS, AIDS, mad cow
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Antoni van leeuwenhoek
first to observe bacteria. used a lens to look at lake water found amoeba, paramecium and euglena.
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Eucarya
- -contain membrane bound nucleus
- - has internal organelles: ER, golgi
- -maybe single or multicellular
- -3 types of eucarya: Algae, fungi, protozoa
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Archaea
- Binarry fission, has flagella
- have cell wall (no peptidoglycan)
- found in extreme enviornments (hot springs, thermal vents)
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bacteria
- rod, sphere and spiral shape
- rigid cell wall
- binary fission, motile by flagella
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viruses
kill host cells; all forms of life can be infected by; are intracellualr parasites; DNA or RNA
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viroids
only in RNA. smaller than viruses. cause plant disease leading to dwarfism.
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prion
proteinatious infectious agents. no nucleic acid. neurodegenerative diseases with no cures. bovine, mad cow, kuru
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Joseph Lister
introduced aseptic surgery using phenol
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total magnification of light microscope
1,000X
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resolution
ability to distinguish between 2 objects.
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refraction
bending of light rays
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bright-field
inexpensive, uses visible light. views living cells, up to 1,000X magnification. organisms must be stained.
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dark field
can observe living cells. reflected visible light. can see unstained cells.
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phase contrast
good for living cells, and unstained cells. usues bent and direct light.
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TEM
embeded in resin, slice with a glass knife. beam passes through specimen. cant view living specimens. 10-100,000X magnification.
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SEM
3d images. coat specimen with gold. non living specimens. shows surface of organism. 10-100,000X magnification.
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basic dyes
+ charge. used for staining
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acidic dyes
-chare. they have no color to them
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gram staining steps
- 1. crystal violet stain.
- 2. water rinsed, then grams iodine
- 3.water rinsed. alcohol is added. this would decolorize a G-. and keep color of G+.
- 4. stain only G- with safranin red
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peptidoglycan
a polymer of NAM and NAG (related to glucose)
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LPS
endotoxin, not secreted, part of G- cell, G- are some times highly pathogenic.
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teichoic acid
G+ has teichoic acids made of phosphates. hold sugars and give the cell a - charge
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lysozome
enzyme in body fluids (tears) breaks the bonds of peptidoglycan.
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penecillin effects on a cell wall
it is more effective against G-, cuz the outer membrane prevents medication from reching site of action (peptidoglycan layer)
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acid fast
stains a small group of organisms that dont readily take up stains. (mycobacterium). high concentrations of lipids.
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capsule
not all cells have one. gel material surrounds the cell. made of glycocalyx. protect bact cells from phagocytosis. ex. bacteria on teeth. protect cells from drying out
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endospore
not all cells make endospores. highly resistant formed by G+ bacteria. not metabolism but can germinate. highly resistant to extreme conditions.
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flagella stains
stains and coats thin flagella, increasing diameter so we can see on the microscope.
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shape
coccus
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shape
bacillus
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shape
vibrio
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shape
spirillium
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shape
spirochaete
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staphylo
cluster of cells
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cytoplasmic membrane
selectively permeable. polar head is hydrophilic, and non polar is hydrophobic. phospholipid bilayer. nutrients in a waste out.
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cell wall
surrounds bacterial cell outside cell membrane. gives cell shape. protects from osmotic damage. has peptidoglycan
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nucleoid
single, circular double stranded DNA molecule that contains all the genetic information required by a cell
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ribosomes
- protein synthesis site
- prokaryote=70s
- eukaryote=80s.
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pili
some have pili. shorter than flagella
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gas vesicles
small ridgid protein-bound compartments that provide buoyancy to the cell. gases flow freely into the cell making it less dense.
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endospores
not all cells make endospores. formed by G+ bacteria. germinate. survive years or centuries. highly resistant to extreme conditions.
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binary fission
one cell divides into 2. and then growth is exponential.
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doubling time equation
Nt=N0X2n^2
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biofilms
mixed community. channels for water movement. has nutrients lots of plasmid transfer.
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aseptic techniques
techniques performed to make sure there is no contamination of the work area, worker, and culture.
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streak plate
main goal is to get isolated colonies.
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when are metabolites made?
during log phase
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metabolite
a product of a chemical reaction in a cell and compounds required for growth, waste materials. flavoring agents and food supplements.
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psychrophiles
-5 to 15C ex: glacier, mountain river.
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psychotroph
20-30C refridgerator, air conditioner
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mesophile
25-45C pathogens, food on the counter
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thermophile
45-70C hot springs, compost pile
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hyperthermophile
70-110C volcano, thermal vent in ocean
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obligate anaerobe
no replication in the presence of oxygen, oxygen may cause death. grow at bottom of the tube.
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facultative anaerobe
grow better with oxygen (more ATP). switch from aerobic to fermentation if no oxygen present. grows more towards the top but generally equally spread.
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obligate aerobe
absolute requirement for oxygen. bacteria need it for ATP production. grows more towards the top.
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microaerophile
requires small amount of oxygen, too much inhibits growth. grows a little bit down from the top.
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aerotolerant
can grow with oxygen, but do not use it to transform energy. neither anaerobic or aerobic. growth they are evenly spread out.
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pH
- most bacteria 6.5-7.5= neutrophiles
- alkalophiles 8.5+
- acidophiles below 5.5
- very few grow under 4
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plasmosis
water loss. if a solute is higher on the outside of a cell, water will move out and the cells membrane shrinks
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osmosis
movement of water across a membrane from dilute solution to a more concentrated solution.
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required elements
C, O, H, N, Su, P, K, Mg, Ca, Fe
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trace elements
cobalt, zinc, copper, molybdenum, and maganese
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photoautotroph
uses sunlight and CO2 as carbon source
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photoheterotroph
uses sunlight energy and organic carbon (not CO2).
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chemoautotroph
uses inorganic carbon for energy and CO2 as carbon
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chemoheterotroph
uses organic carbon compounds for energy and carbon source. eukaryotes, humans and other animals.
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complex media
contains variety of ingredients. no exact chemical formula. EX. nutrient agar.
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defined media
precise amounts, replicate it exactly every time, pure. we dont use this because it is too expensive.
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selctive media
inhibits the growth of some organisms while selecting for others. Ex. EMB
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differential media
color change. differentiated between different organisms growing on the same plate.
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sterilization
removes ALL microbes. by filtration, heat, chemicals, and irradiation
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disinfection
eliminates most pathogens. disinfectants are used on surfaces,and antiseptics are used on the skin
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pasteurization
breif heat treatment used to reduce organisms that cause food spoilage. ex. milk, juice, water
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what would influence you in selecting a antimicrobial procedure?
- 1. type of microbe
- .2 number of microbes initially present
- 3. enviornmental conditions
- 4. potential risk of an infection
- 5. composition of the item
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destroying microbes with heat
its most useful for microbial control fast, safe, reliable, inexpensive. heat sterilizes and disinfects. 121c for 15 mins.
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destroying microbes with filtration
remove microbes from fluids and air. Air- by HEPA filters.
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destroying microbes with raidation
causes damage to the DNA and potentially to plasma membrane. used to sterilize materials that arent heat resistant. Ex. x-rays, gamma rays.
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destroying microbes with pressure
used in pasteurization of foods. not high temp, but pressue. denatures the proteins.
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function of autoclave?
device that uses steam under pressure steralize materials that are stable to heat and moisture.
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factors that would influence you on selecting a certain antimicrobial chemical.
low temperature, reducing available water, adding salt or sugar, drying food.
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germicide: alcohol
commonly used as an antiseptic gel and disinfectant
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germicide: aldehydes
inactivates proteins and DNA
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germicide: biguandies
used in anitseptics cuz of low toxicity. ex: mouth wash
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germicide: ethylene oxide
a gas that destroys microbes including endospores and viruses
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germicide: halogen
chlorine is used as a disinfectant and iodine kills vegetative cells only.
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germicide: peroxygens
hydrogen peroxide. like using it on a cut.
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germicide: phenols
ex: lysol. destroys the plasma membrans and denatures proteins. ex: soaps lotions.
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germicide: quats
non-toxic. the quats positive charge attracts to the negatice charge of the cell surface.
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germicide: metal
silver interferes with enzymes and proteins. ex: cream for burns. its an oxidizer "attacks foreign material.
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anabolism
utilizes energy stored in ATP to synthesize and assemble building blocks of macromollecules that make up the cell
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catabolism
harvest energy released during the breakdown of compounds such as glucose, using it to synthesize ATP
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substrate level phosphorylation
synthesis of ATP using the energy released in exergonic chemical reaction
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