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What is a mutation?
Any change in the base sequence of DNA
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What’s so special about abnormal DNA mutations
Mutations are heritable. Once the mutation arises, it stays and is passed on.
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What can a mutation do
It can lead to a faulty or missing protein.
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Are mutations important only for inherited diseases?
No, mutations in somatic cells can do a lot of damage as well.
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Two types of Single-base substitution (“pointmutation”)
- Transition - Pyr for a Pyr (T-C; A-G)
- Transversion Pyr for a Pur or vice a vs

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Somatic mutations are important for
Aging and Cancer
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Germline mutations
In gametes or the precursors of gametes. Can lead to genetic diseases
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Duplication is most common when
During crossing over in Meiosis
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How many hydrogen bonds are between the base pairs
Only two
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What is the weakest bond between bases in DNA
A Purine base, and a deoxyribose
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90% of disease causing mutations are found in what
The coding sequence of the gene
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What is a somatic cell
Any cell but those in the germline
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What is neoplasia
An abnormal growth
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Each child is born with about
- 100 new mutations.
- − Most of these mutations are harmless.
- − A few are slightly unfavorable. They contribute to polygenic diseases.
- − Rarely, a single mutation is bad enough to cause a disease.
- − Favorable mutations are very rare
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Why are most serious genetic diseases rare?
Those carrying the genes usually die or can't reproduce
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Is purifying selection more effective for recessive or for dominant disease mutations?
- Recessive can be passed without ever manifesting itself
- Dominant always express themselves, but remain low causing disease. This is when natural selection kicks in, therefore dominant
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Causes of mutations can be
- Spontaneous tautomeric shifts
- Ionizing radiation (X-rays, radioactivity)
- UV radiation (sunlight)
- Chemicals
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Spontaneous tautomeric shifts
A change in a bases in nucleic acid, shift between keto and enol forms or between amino and imino forms
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The risk of new mutations depends on parental
- Age,
- Increased maternal age is a risk factor for aberrations in chromosome number.
- Advanced paternal age is a risk factor for point mutations.
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Nucleotide excision repair
This is for lesions that are large enough to distort the geometry of the DNA double helix- The removed gap is filled by DNA polymerase and DNA ligase
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Two defects of nucleotide excision repair
- Xeroderma pigmentosu
- Cockayne syndrome
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Xeroderma pigmentosu
- − Defect of genome-wide nucleotide excision repair
- − Sunburn, skin cancer
- − Autosomal recessive
- − 7 different types

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Cockayne syndrome
- − Defect of transcription-coupled nucleotide excision
- repair
- − Poor growth, neurological problems, early senility
- − Autosomal recessive
- − 2 different types

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LYNCH SYNDROME (HEREDITARY NON-POLYPOSIS COLON CANCER)
- Happens most in quickly dividing cells
- − Defect of post-replication mismatch repair
- − ≥50% risk of colon cancer
- − Also increased risk of other cancers
- − Autosomal dominant inheritance
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Post-replication mismatch repair happens how
When mismatched DNA is found it is removed (while still attached to the original strand) and then repaired by DNA polymerase and ligase
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Why does a defect of post-replication mismatch repair cause cancer
All cells have a heterozygous defect in a mismatch repair protein. When a somatic mutation disrupts the single intact copy of the gene, the cell becomes a mutator. Some of these mutator cells become cancerous.
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ATAXIA-TELANGIECTASIA
- Caused by a mutation in a signaling protein required for the repair of DNA double-strand breaks.
- Abnormalities:
- Cerebellar ataxia (loss of body movement) starting in early childhood
- Dilation of small blood vessels
- Sensitivity to ionizing radiation
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Radiation ionizing has what effect on the body
- 1. Can knock off electrons off orbitals
- 2. Can hit DNA directly
- 3. Makes hydroxyl radicals
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What is the only base with a methyl group
Thymine
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Free radicals are present in the body where
Wherever oxydation takes place
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What can a Thymine base be replaced with
5-Bromouracil
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Nitrite is partially
Mutagenic and is used as a preservative in meat
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Depurinated means
A base is deleted
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AP endonuclease, Polymerase B
- AP endonuclease, polymerase beta remove wrong material
- Polymerase Beta replaces with correct nucleotide
- Ligase fills the small gap leftover
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Why is the advantage of having Thymine instead of Uricil in the DNA
The deamination of uricil to cytosine is not detected and therefore won't be repaired
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Methylcytosine has high mutation rate why
- Its deamnination produces thymine that won't be detected to be repaired by incision repair
- This is what makes CG sequences a hot spot for mutations
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Nucleotide Excision repair
Is one of the most important repair systems!!
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Deamination
Removal of an amine. Because base pair excision can't recognize this it is considered a hot spot for mutations
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What are intercalating agents
Aromatic structures that place themselves between base pairs pushing them apart. These can contribute to small insertions and deletions
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