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One gene - one polypeptide (protein) hypothesis
- each gene dictates production of a specific polypeptide
- ex: gene A codes for polypeptide A and variations because of different alleles
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Goal of transcription and translation
transfer from nucleic acid language (DNA) to protein language
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Transcription
- synthesis of RNA under direction of DNA
- produces messenger RNA (mRNA)
- takes place in the nucleus
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Translation
- synthesis of a polypeptide (protein)
- occurs on ribosomes
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The central dogma
Cells are governed by a cellular chain of command: DNA --> RNA --> protein
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The genetic code
- 4 nucleotide bases in DNA
- 20 amino acids
- Codons are 3 bases, read in 5' to 3' direction (each codon specifies amino acid)
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2 rules of genetic code
- No ambiguity within the genetic code - means each codon only appears once (and codes for a specific amino acid)
- There is redundancy in the genetic code. For most proteins, there are multiple codons.
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RNA polymerase
pries DNA strands apart and hooks together RNA nucleotides
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3 stages of transcription
- Initiation
- Elongation
- Termination
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Transcription: Initiation
- brings everything together and is now ready to start transcription
- needs to have promoter region including TATA to start
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Transcription: Elongation
- RNA polymerase moves along the DNA and untwists the double helix
- happens very quickly
- through elongations, we get growing mRNA strand
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Transcription: Termination
- In bacteria, polymerase stops transcription at the end of the terminator
- In eukaryotes, polymerase continues transcription after the pre-mRNA is cleaved from the growing RNA chain; the polymerase eventually falls off the DNA
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Each end of a pre-mRNA molecule is modified
- The 5' end receives a modified nucleotide 5' cap
- The 3' end gets a poly-A tail
- Cap and tail helps make it easier to get out of nucleus, helps attaching, and protects mRNA
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Introns
- intervening sequences; noncoding regions
- don't need introns in translation
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Exons
- other regions; eventually expessed
- usually translated into amino acid sequences
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RNA splicing
removes introns and joins exons, creating an mRNA molecule with a continuous coding sequence
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Transfer RNA (tRNA)
- helps translate an mRNA message into protein
- one end of tRNA has anticodon, and the other end has an amino acid. Anticodon matches up with the mRNA codon
- *serves as adaptor molecule in protein synthesis; translates mRNA codons into amino acids
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Translation: Ribosomes
Ribosomes facilitate specific coupling of tRNA anticodons with mRNA codons in protein synthesis
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Ribosomal RNA (rRNA)
- along with proteins, make up the two ribosomal subunits
- plays catalytic (ribozyme) roles and structural roles in ribosomes
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3 stages of translation
- Initiation
- Elongation
- Termination
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Translation: Initiation
Brings together mRNA, a tRNA with the first amino acid, and the two ribosomal subunits
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Translation: Elongation
- 3 steps:
- Codon recognition
- Peptide bond formation
- Translocation
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Codon recognition
occurs when anticodons on tRNA recognize codons on mRNA
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Peptide bond formation
when we transfer amino acids from tRNA onto the elongated chain of amino acids
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Translocation
everything moves down a spot
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Translation: Termination
- Occurs when stop codon in mRNA reaches 'A site' of ribosome
- our bodies need to regulate so we don't have too much or too few proteins
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Post-translation polypeptide modification
- Polypeptide chains are modified after translation
- Completed proteins are targeted to specific sites in the cell
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Mutations
- changes in genetic material of a cell or virus
- not always bad - forms natural selection
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Point mutations
changes in just one base pair of a gene
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Types of point mutations
- Base-pair substitutions
- Base-pair insertions or deletions
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Frameshift
when each codon is changed and frame is shifted; causes nonsense and missense from insertions or deletions
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Silent mutation
aka neutral mutation because it doesn't affect the actual outcome of protein structure or function
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Missense
new codon codes for an amino acid, just not the right amino acid (doesn't make sense)
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Nonsense
base pair codes for a stop codon; don't get an amino acid
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3 base-pair deletion
no frameshift occurs, but one amino acid is missing
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Mutagen
- physical or chemical agent that can cause mutations
- different than carcinogen because not all mutagens have to do with cancer.
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Messenger RNA (mRNA)
Carries info specifying amino acid sequences of proteins from DNA to ribosomes
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Primary transcript
Is a precursor to mRNA, rRNA, or tRNA, before being processed. Some intron RNA acts as a ribozyme, catalyzing its own splicing
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Small nuclear RNA (snRNA)
Plays structural and catalytic roles in spliceosomes, the complexes of protein and RNA that splice pre-mRNA
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