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What are the 4 steps in the formation of a biofilm?
- Initial Attachment
- Irreversible attachment
- Maturation I
- Maturation II
- Dispersion
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A living organism's attempt to maintain a stable internal state is known as what?
Homeostasis
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Membrane enclosed compartments in Eukaryotic cells are called ___.
Organelles
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Based on several chemical & biochemical differences, ___ developed a three domain system for classification.
Woese
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Woese's 3 domain system broke prokaryotes into ___ & ___ & placed what 4 kingdoms into Eukarya?
- Bacteria & Archaea
- Protista, Fungi, Plantae, Animalia
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An organism's species name consists of what 2 parts?
Genus & Specific Epithet
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The ____ is used to measure dimensions of bacterial, ptrotozoal & fungal cell while the ____ is commonly used to express viral sizes.
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The instrument most widely used to observe microorganisms is the ___ ___.
Light Microscope
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In a light microscope, light passes thru several lens systems that ___ & ___ the object being observed.
Magnify & Resolve
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The ability of a microscope to transmit light w/o variation & allow closely spaced objects to be clearly distinguished is known as ____ ____.
Resolving power
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A ____ is a complex, metabolically cooperative community made up of peacefully coexisting bacterial species.
Biofilm
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The ability of bacteria to sense their numbers & then communicate & coordinate behavior, including gene expression, via signaling molecules.
Quorum Sensing
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What is bioremediation?
The use of biofilms to remove or clean up chemically contaminated environments.
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Define metabolism.
All chemical reactions occurring in an organism or cell
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Protein synthesis is accomplished by the ____ according to genetic instructions received fr DNA
Ribosomes
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Bacterial cells have a ___,___ DNA molecule w/o an ___ ___ where as eukaryotes have multiple linear chromosomes enclosed by membrane env in nuc.
- Single, circular
- Enclosed membrane
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Although protein synthesis is the same, structurally bacterial ribosomes are ____ ___ their counterparts in eukaryotic cells.
Smaller than
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Eukaryotic & bacterial cells have subcellular compartments. In eukaryotes they are called ___ but in bacteria they are ___ ___or ___ ___.
- Organelles
- Not readily visible
- Membrane enclosed
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Eukaryotes utilize an endomembrane sys to transport protein & lipid cargo. Bacteria however utilize ____ surrounded by a ___ shell for this purpose.
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A process called ___ ___ converts chem energy into cellular energy for cellular work
Cellular Respiration
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Cell Resp occurs in mitochondria & chloroplasts in eukaryotes, but bacteria & archaea lack mitochondria so it occurs where?
Cytosol & cell membrane
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The eukaryotic cytoskeleton composed of microfilaments fr the centrosome gives cell structure & assists w/moving materials around the cell. How does the bacterial version compare?
Bacteria have no cytoskeleton
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Cell motility is bacterial cells is accomplished by Bacterial ___ & in eukaryotes it is accomplished by Eukaryotic ___or ___.
- Flagella
- Flagella or Cilia
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T or F Water balance is accomplished by the same structure in both Bacteria & Eukaryotes. What structure accomplishes this task?
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Linnaeus IDed living organisms according to similarities & placed them in what 2 kingdoms?
Vegitalia & Animalia
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In 1990, it became clear that kingdom Monera contained 2 fundamentally unrelated grps that ____ initially called what?
- Woese
- Bacteria & Archaebacteria
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What is taxonomy?
The science of IDing, describing, naming & classifying organisms.
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The 3 domain sys proposed by Carl Woese was based on what & what were they?
- Data fr ribosomal RNA sequences
- Bacteria, Eukarya & Archaea
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What is the term given to the evolutionary hx of a species or grp of species?
Phylogeny
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Populations or grps of individuals having the same genotype are called ___.
Biotypes
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What are antibodies?
Proteins produced by immune sys in response to a specific chem configuration
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Visible light is projected thru a condenser lens & focused into sharp cone. Light then passes thru the stage, hits slide & is reflected or refracted as it passes thru the specimen & enters the obj lens to form magnified intermediate image. This type of microscopy is known as. . . .
Bright light
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____ refers to the increase in the apparent size of the specimen being observed.
Magnification
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Why is the light microscope called a compound microscope?
B/c it has several lenses
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Total magnification is equal to what?
Magnification of the ocular multiplied by magnification of obj lens being used
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The ___ of ___ is a measure of light bending ability of a medium.
Index of Refraction
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Why do we stain bacterial cells?
B/c the cytoplasm lacks color making it hard to see cells on a bright background
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The lens we look through is called the ___ lens.
Ocular
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The image we see just below the ocular lens is called what?
Intermediate Image
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The lens that is direct at the specimen is called the ___ lens.
Objective
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The condenser is located where?
Directly under the stage
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Heat fixation does what 3 things?
- Bonds cells to slide
- Kills any organisms still alive
- Increases stain absorption
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What are the steps in the simple stain technique?
- Cells in H2O/broth smeared on slide & allowed to dry
- Heat fixation
- Flood w/basic (cationic)dye
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Why is basic dye attracted to cell walls & cytoplasm?
B/c cationic dyes have pos charge & cells are primarily neg
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What is one example or basic (cationic) dye?
Methylene Blue
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What 3 pieces of info can be provided by contrasting blue cells against a bright background (simple stain technique)
- Size
- Shape
- Arrangement w/respect to other cells
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In the simple stain technique the cells are stained w/basic (cationic) dye however in the neg stain technique ___ (___) dye is used & the ____ is stained.
- Acidic (anionic)
- Background
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What is the procedure for negative staining?
- Mix cells on slide w/acidic dye
- Push mix across face of slide & allow to air dry
- View
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What are 2 examples of acidic (anionic) dyes?
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Why is the background stained on the negative stain technique?
B/C anionic dye contains a neg charge & is repelled fr the cytoplasm & cell wall
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The negative stain technique provides cells that are less shriveled & distorted than simple stain. Why?
B/C this technique avoids chem reactions & heat fixation
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In Gram stain technique red bacteria is (pos/neg) & violet bacteria is (pos/neg).
- Red Bacteria = Gram neg
- Violet Bacteria = Gram pos
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What is the counter stain in Gram stain technique?
Safranin
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In Gram stain technique, cells are stained w/ ___ ___ & Gram's ___ solution & washed w/a ___.
- Crystal Violet
- Iodine
- Decolorizer
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What are the steps in Gram stain technique after smears are air dried & heat fixed?
- Stain w/crystal violet & rinsed
- Add Gram's Iodine solution
- Rinse w/decolorizer (95% alcohol / alcohol-acetone mix)
- Counterstain w/safranin
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Prior to adding safranin in Gram staining technique, Gram-neg cells will appear ____ & Gram-pos cells will appear ____.
- Transparent
- Crystal Violet
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What are the 2 differential staining techniques we learned?
-
What staining technique is used to ID members of the genus Mycobacterium?
Acid-fast Technique
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Why would we utilize the acid fast technique?
When we encounter cells w/waxy walls the resist dyes
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What is the special feature of a phase-contrast light microscope?
Special condenser throws light rays "out of phase"
-
What objects are best observed w/a phase contrast light microscope?
Internal structures of live unstained eukaryotic microorganisms
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How do objects appear when viewed through a phase-contrast light microscope?
Unstained microorganisms w/contrasted structures
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What is the special feature of a dark-field light microscope?
It utilizes a special condenser that scatters light
-
How do objects appear when viewed w/a dark-field light microscope?
Unstained microorganisms on a dark background
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Hat objects are best observed w/a dark-field light microscope?
- Live, unstained microorganisms
- Motility of live cells
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What is the special feature of a Fluorescence Light microscope?
UV light illuminates fluorescent coated objects
-
How do objects appear when they are viewed thru a fluorescence light microscope?
Fluorescing microorganisms on a dark background
-
Hat objects are best viewed w/a fluorescence light microscope?
Outline of microorganisms coated w/fluorescent-tagged antibodies
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What is the special feature of a transmission electron microscope?
Short-wavelength electron beam penetrates sections of the specimen
-
How do objects appear when viewed w/a transmission electron microscope?
Alternating light & dark areas contrasting internal cell structures
-
What objects are best observed w/a transmission electron microscope & what is the magnification range?
- Ultrathin slices of microorganisms & internal components
- 100x - 2,000,000x
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What electron microscope utilizes short-wavelength electron beams to knock loose electron showers?
Scanning
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Surfaces & textures of microorganisms & cell components are best viewed w/a ___ electron microscope.
Scanning
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What is the term that describes the ability of organisms to maintain a stable internal state?
Homeostasis
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Which on the following is NOT an organizational pattern common to all organisms (A. genetic organization/ B. protein synthesis/ C. compartmentation/ D. Microcompartments)?
Microcompartments
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Which is NOT found in bacterial cells (A. ribosomes/ B. DNA/ C. mitochondria/ D. Cytoplasm)
Mitochondria
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Who is considered the father of modern taxonomy?
Linnaeus
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___ was first used to catalog organisms into one of three domains.
rRNA genes
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What is the name of the genus that causes syphilis?
Treponema
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Several classes of organisms would be classified into one ___.
Phylum
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An important method used for the rapid ID of a pathogen is ___.
Biochemical Methods
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Most bacterial cells are measured using what metric sys of length?
Micrometers
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Resolving power is the ability of a microscope to what?
See 2 close objects as separate
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B/f bacteria cells are simple stained & observed w/the light microscope they must be what 3 things?
- Smeared on a slide
- Air dried
- Heat fixed
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If you want to study bacterial motility you would most likely use what type of microscope?
A light microscope w/dark field optics
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If you wanted to study the surface of a bacterial cell, you would use what type of microscope?
A scanning electron microscope
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