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Transcription(Nucleus)
- the synthesis of RNA using information in the DNA.
- DNA -> mRNA
- mRNA - carries a genetic message from the DNA to the protein-synthesizing machinery of the cell
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Translation (cytoplasm)
- synthesis of a polypeptide using theinformation in the mRNA.
- RNA -> Proteins
move through Ribosome, mRNA(3 letters) are translated to 1 amino acid
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primary transcript
- The initial RNA transcript from any gene, including those specifying RNA that is not translated intoprotein
- In eukaryotic, pre-mRNA, is processed in various ways before leaving the nucleus as mRNA
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Central Dogma
- DNA->(transcription) RNA ->(translation) Protein
- Francis Crik
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triplet code
The genetic instructions for a polypeptide chain are written in the DNA as a series of nonoverlapping, three-nucleotide words. 4^3
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codons
- mRNA nucleotide triplets
- customarily written in the 5' - 3'direction
- codons are complementary to the template strand and thus identical in sequence tothe mRNA
- 64 codons, 61 = amino acids, 3 are stop signals
- AUG (Met) - start signal
- Redundacy(GAA, GAG)
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reading frame
ability to extract the intended message from a written language depends on reading the symbols in the correct groupings
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RNA polymerase
- enzyme assemble a polynucleotide only in its 5' -3' direction
- don't need primer to start
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Promoter
where RNA polymerase attaches and initiates transcription
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Terminator
in bacteria, the sequence that signals the end of transciption
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Transcription unit
stretch of DNA that is trancribed into RNA molecule
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Three stages of Transcription
- Initiation - RNA polyerase binds to promoter, unwind, initiates RNA synthesis at starting point
- Elongation - polymerase move downstream, 5'-3', DNA strands reform double helix
- Termination - RNA transcription released and polymerase detaches
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Transcription factor (Eu.)
collection of proteins mediate the binding of RNA polymerase and initiate transcription
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Transcription initiation complex (Eu.)
the whole complex of transciption factors and RNA Pol II bound to the promoter
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The initiation of transcription at a Eukaryotic promoter
- Eukaryotic promoter - includes a TATA box( a nucleotide sequence contains TATA, about 25 nucleotide upstream from the start point
- Several transcription factors - one recognizing TATA box, must bind to the DNA before RNA Pol II can can bind in correct postion
- Additional Transcription factors - bind to the DNA along with RNA polymerase II, forming th etranscription initiation complex. RNA polymerase II then unwinds the DNA double helix,
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Eukaryotic termination
- RNA polymerase II transcribes a sequence on the DNA called the polyadenylation signal sequence in the pre-mRNA.
- Then, at a point about 10–35 nucleotides downstream from the AAUAAA signal, proteins cut it free from the polymerase,
- pre-mRNA. The pre-mRNA then undergoes processing,the topic of the next section
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RNA processing
- both ends of the primary transcript are altered
- 5' cap - guanine (G) nucleotide added
- 3' end - an enzyme adds 50–250 more adenine (A) nucleotides, forming a poly-A tail
- facilitate the export of the mature mRNA
- help protect the mRNA from degradation
- they help ribosomesattach to the 5' end of the mRNA
- RNA splicing certain interior sections of the RNA molecule are cut out and the remaining parts spliced together
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DNA nucleotides/ RNA splicing
- not continuous; it is split into segments
- introns -(intervening) The noncodingsegments of nucleic acid that lie between coding regions
- exons - they are eventually expressed,usually by being translated into amino acid sequences
- introns are cut out adnd exons joined together
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spliceosome
- Several different snRNPs join with additional proteins to form an even larger assembly
- interacts with certain sites along an intron,releasing the intron, which is rapidly degraded, and joining togetherthe two exons
- snRNAs catalyze these processes, as well as participating in spliceosome assembly
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ribozymes
- RNA molecules that function as enzymes
- without proteins: The intron RNA functionsas a ribozyme and catalyzes its own excision
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Three properties of RNA enable some RNA molecules tofunction as enzymes
- Itcan form a three-dimensional structure because of its ability to base pair with itself
- Some bases in RNA contain functional groups
- RNA may H-bond with other nucleic acid molecules
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alternative RNA splicing
Many genes are known to give rise to two or more different polypeptides, depending on which segmentsare treated as exons during RNA processing
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domains
Proteins often have a modular architecture consisting ofdiscrete structural and functional regions
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transfer RNA (tRNA).
- transfer amino acids from the cytoplasmic pool of amino acids to a growing polypeptide in a ribosome
- arrives at a ribosome bearing a specific amino acid at one end
- At the other end of the tRNA is a nucleotide triplet called an anticodon(base-pairs with a complementary codon on mRNA)
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aminoacyl-tRNA synthetases
enzyme that matching up of tRNA and amino acid
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wobble
- the flexible base pairing at thsi codon position
- differ in the third nucleotide base
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Ribosome
- made up of a large subunit and a small subunit
- 1/3 = proteins, 2/3 = rRNA
- has three binding sites for tRNA:
- P site -holds the tRNA carrying the growing polypeptide chain
- A site - holds the tRNA carrying the next amino acid to be added to the chain
- E site - exit site
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The initiation of translation
- Joins mRNA, a tRNA with the first amino
- acid, and the two ribosomal subunits
- Proteins called initiation factors are required to bring all thetranslation components together
- GTP provides the energyfor the assembly
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The elongation cycle of translation
- Amino acids are added one by one to form a chain
- Codon recognition
- Poltide bond formation- bond betweed A site with P site
- Translocation - more one to the left, P to A, P to E
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Termination
- When a stop codon reaches the A site
- Release factor protein adds H2O
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polyribosomes
enable a cell to make many copies of a polypeptide very quickly
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mutations
- changes in the genetic material of a cell or virus
- point mutations - changes in a single nucleotide pair of a gene
- sickle cell disease
- -single nucleotide-pair substitutions and (2) nucleotide-pair insertions or deletions
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silent mutation
which has no observable effect on the phenotype. (Silent mutations can occur outside genes as well.
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missense mutations
- Substitutions that change one amino acid to another one
- may have little effect on the protein: The new amino acid may have properties similar to those of theamino acid it replaces,
- it may be in a region of the protein where the exact sequence of amino acids is not essential tothe protein’s function
- •Still code for an amino acid, but not necessarily the right amino acid
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Nonsense
- Change an amino acid codon into a stop codon, nearly always leading to a nonfunctional protein
- causes translation to be terminated prematurely; the resulting polypeptide will be shorter
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Insertions and deletions
- Additions or losses of nucleotide pairs in a gene
- cause frameshift mutation
- result will be extensive missense, usually ending sooner or later in nonsense and premature termination
- -> nonfunctional
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spontaneous mutations
incorrect base will be used as a template in the next round of replication,
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mutagens
- A number of physical and chemical agents, interact with DNA in ways that cause mutations
- Ex. X-ray/ radiation
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considered a gene as:
- A discrete unit of inheritance - Mendel
- A region of specific nucleotide sequence in a chromosome -Morgan
- A DNA sequence that codes for a specific polypeptide chain
- A region of DNA that can be expressed to produce a final functional product, either a polypeptide or an RNA molecule
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