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Ester
- Formed from reaction of acid and alcohol
- Found in fats, oils, also nerve chemical acetylcholine
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Hydroxyl
- same as in bases
- found in alcohols and sugars
- makes organic molecules water-soluble
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Carboxyl
- organic acid (H+ easily donated)
- also written ---COOH
- usually charged (ie. ---COO-) at cellular pH
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Amino
- acts as base
- binds H+to form ---NH3+ at cellular pH
- amino + carboxyl in same molecule is an amino acid
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Phosphate
found in energy-storing molecules and in nucleic acids (DNA, RNA)
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Carbonyl
- carbon and oxygen in double covalent bond
- found in ketones, formed when fats are broken down
- water-loving groups
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Sulfhydryl
- like Hydroxyl, but sulfur + hydrogen
- important in protein structure
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Carboxyl
- organic acid (H+ easily donated)
- Also written ---COOH
- usually charged (ie ---COO-) at cellular pH
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Define Organic Molecules
are those that contain carbon. More complex than inorganic molecules. Generally, larger than inorganic molecules.
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Examples of Organic Molecules
- Carbohydrates
- Lipids
- Proteins
- Nucleic Acids (DNA, RNA)
- Adenosine Triphosphate (ATP)
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Define Isomer
When molecules have the same number of atoms of each element, but different arrangements.
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An isomer are uncommon outside of
Carbon-based compounds, but common in compunds that contain carbon.
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What are the four main kinds of biological molecules.
- Carbohydrates (sugars)
- Lipids (fats)
- Proteins
- Nucleic Acids
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Carbohydrates
- Watered carbon.
- Always one carbon plus one water (H2O): formula CxH2xOx
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Lipids (fats)
More carbon than oxygen; repel water (hydrophobic)
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Proteins (made up of amino acid)
Amino acids always contain carbon, hydrogen, oxygen and nitrogen.
Some amino acids contain sulfur
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Nucleic Acids
- Sugar "backbone" plus nitrogenous base
- Nitrogenous base with one or two rings.
- One-ring pyrimidines (uracil, thymine, cytosine)
- Two-ring purines (adenine, guanine)
- Deoxyribose backbone: deoxyribonucleic acid (DNA)
- Ribose backbone: ribonucleic acid (RNA)
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Define Monomer
are single units
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A carbohydrate monomer is a simple sugar (monosaccharide) such as
glucose
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A protein monomer is an
amino acid
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a nucleic acid monomer is a
nucleotide
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Define Polymer
When monomers are bound together in a string or branched structure.
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Polymers of carbohydrates include many
sugars, starches, and glycogen.
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Polymers of amino acids are
polypeptides and proteins.
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Polymers of nucleotides are the
deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) molecules.
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Define Carbohydrate
- Five or six carbons
- Always carbon + water
- Form ring structures by linking carbons 1 and 5 through an O
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Carbohydrates such as glucose often form
ring structures with themselves.
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Define dehydration synthesis
When two or more carbohydrate molecules are strung together this way, the series of dehydrations results in a carbohydrate polymer.
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A final shorthand way of representing carbohydrates is to
drop the C atoms altogether. This is because carbons always form four bonds, so any time we see four lines converging on a point, we assume that point contains a C atom.
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