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Karyotype
Display of chromosomes ordered by their length
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Haploid
- Having one copy of each chromosome
- N = 1
- Human gametes
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Diploid
- Having two copies of each chromosome
- N=2
- Human somatic cell
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Aneuploid
Having one or more missing or extra chromosomes
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Balanced chromosomal sbnormality
No net gain or loss of chromosomal material
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Unbalanced chromosomal abnormality
Net gain or loss of genetic material
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Uniparental disomy
A chromosome pair is derived solely from one parent in the diploid offspring
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p and q arms of chromosome
p = short arm
q = long arm
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Metacentric chromosome
Both arms are of equal length
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Submetacentric chromosome
One arm is a bit shorter than the other arm
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Acrocentric chromosome
One arm is much shorter than the other arm
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Autosome
Any somatic chromosomes
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Sex chromosomes
Contrast with autosomes
In humans, X and Y are the sex chromosomes
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Euchromatin
decondensed, active form of a chromosomal region
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Heterochromatin
Condensed, inactive form of a chromosomal region
Facultative heterochromatin can become decondensed but constitutive is always condensed
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Chromosome banding
Staining of bands of chromosome segments
Allows for the precise identification of individual chromosomes or parts of chromosomes
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Nondisjunction
The failure of the paired chromosomes to segregate properly during meiosis or mitosis
Results in daughter cells with an abnormal number of chromosomes
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Reciprocal translocation
Segments of two different chromosomes have been exchanged
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Robertsonian translocation
Joining of two acrocentric chromosomes at the centromeres with loss of their short arms to form a single abnormal chromosome
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Inversion
A segment of the chromosome is flipped around the and the genetic material is inverted
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Ring chromosome
Usually occurs when a chromosome breaks in two places and the ends of the chromosome arms fuse together to form a circular structure
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Origin of replication
Site on DNA molecule where replication starts
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Leading strand
The strand of DNA double helix that is copied in a continuous fashion
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Lagging strand
The strand of the DNA helix that is copied in a discontinuous fashion
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Topoisomerases
Class of enzymes that alter the supercoiling of double-stranded DNA
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Helicases
Enzyme that separates the strands of the DNA double helix
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Okazaki fragments
Short segment of RNA-primed DNA that is synthesized on the lagging strand during replication
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Antimetabolites
A drug or substance that is an antagonist to or resembles a normal metabolite and thus interferes with its function, usually by competing for its receptors or enzymes.
Antimetabolites used as anticancer agents include 5-fluorouracil (5-FU)
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Telomerase
Enzyme consisting of RNA and protein components that maintains the ends of chromosomes by adding specific repeat sequences.
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Polymerase slippage
DNA polymerase can lose its place in a repetitive sequence tract, and either leaves out or add an inappropriate number of repeat units.
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Base Excision Repair (BER)
DNA repair process that involves the excision and replacement of a normal base
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Nucleotide excision repair (NER)
DNA repair process involving the excision and resynthesis of a polynucleotide region
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Homologous recombination
In the context of DNA repair, a process involving the recombination between homologous double-stranded DNA molecules.
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Nucleotide
Base + Sugar + Phosphate
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Allele
One of the alternative versions of a gene or DNA sequence at a given locus.
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Autosomal dominant
- A pattern of inheritance in which an affected individual has one copy of a mutant gene and one normal gene on a pair of autosomal chromosomes
- (example: Huntington disease).
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Autosomal recessive
A pattern of inheritance in which an affected individual has two copies of the mutant gene (example: cystic fibrosis).
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Codominant:
If both alleles of a pair are expressed in the heterozygous state, then the alleles (and/or traits determined by them) are codominant.
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Compound heterozygote:
An individual or genotype with two different mutant alleles at the same locus.
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Consanguineous
Related by descent from a common ancestor.
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Expressivity
The extent to which a genetic defect is expressed. If there is variable expressivity, the trait may vary in expression from mild to severe but is never completely unexpressed in individuals who have the corresponding genotype. Contrast this concept with that of penetrance.
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Founder effect
A high frequency of a mutant allele in a population founded by a small ancestral group when one or more of the founders was a carrier of the mutant allele.
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Genetic anticipation:
- The progressively earlier onset and increased severity of certain diseases in successive generations of a family. Anticipation is caused by expansion of the
- number of unstable repeats within the gene responsible for the disease.
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Genotype:
- The genetic constitution f an individual, as distinguished from the phenotype.
- More specifically, the alleles present at one locus.
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Heterozygous:
An individual or genotype with two different alleles at a given locus on a pair of homologous chromosomes.
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Homozygous
An individual or genotype with identical alleles at a given locus on a pair of homologous chromosomes.
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Locus
The position occupied by a gene on a chromosome. Different forms of the gene (alleles) may occupy the locus.
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Mutation:
Any permanent heritable change in the sequence of genomic DNA.
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Penetrance:
The fraction of individuals with a genotype known to cause a disease who have any signs or symptoms of the disease. Contrast with expressivity.
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Phenotype
- The observed biochemical, physiological, and morphological characteristics of an individual, as determined by his or her genotype and the environment in which it is expressed. Also, in a more limited sense, the abnormalities resulting from a particular
- mutant gene.
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Polygenic inheritance
- Inheritance determined by many genes at different loci, with
- small additive effects; not to be confused with multifactorial inheritance, in which environmental as well as genetic factors may be involved.
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Proband
The affected family member through whom the family is ascertained.
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Random (disassortative) mating:
- Selection of a mate without regard to the genotype of
- the mate. In a randomly mating population, the frequencies of the various matings between individuals with particular genotypes are determined solely by the frequencies of
- the alleles concerned.
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X-linked dominant:
- Genetic inheritance by which a dominant gene is carried on the X chromosome. A gene responsible for a genetic disorder is located on the X chromosome,
- and only one copy of the allele is sufficient to cause the disorder when inherited from a parent who has the disorder.
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X-linked recessive
- Genetic inheritance in which a mutation in a gene on the X chromosome causes the phenotype to be expressed (1) in males (necessarily hemizygous for the gene mutation because they have only one X chromosome) (2) in
- females (homozygous for the gene mutation: They have a copy of the gene mutation on each of their two X chromosomes).
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Shotgun sequencing
DNA sequence is shredded into random segments and the small fragments are then individually sequenced
The sequences of these fragments are then used to determine the sequence of the original DNA sample
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Hierarchical shotgun sequencing approach
Large, overlapping DNA fragments of a known location in the genome are shredded and sequenced.
The sequences of these large fragments are then used to determine the sequence of the human genome
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Whole-genome shotgun sequencing
Genome is shredded into small fragments and then sequenced to determine the sequence of the entire genome
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Exome
The complete exon conent of an individual
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Interspersed repeats
A class of specific repeat sequences in the human genome
Consit of LINE, SINE, and retro-virus like elements as well as DNA transposon fossils
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LINEs
Long interspersed nuclear elements
- a specific type of interspersed repeat element
- that encode the proteins necessary for their own replication
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SINEs
Short interspersed nuclear elements are
- a specific type of interspersed repeat element
- that do not encode the proteins necessary for their own replication.
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Retrovirus like elements
Specific type of interspersed repeat element that may or may not encode the proteins necessary for their own replication
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DNA transposon fossils
Specific type of interspersed repeat element that may or may not encode the proteins necessary for their own replication.
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Segmental duplications
Sequences >1-kb in length that share 90-98% identity. A segmental duplication can contain interspersed repeat sequences.
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de novo mutations
a sequence change that is present for the first time in one family member as a result of a mutation in a germ cell of one of the parents or in the fertilized egg
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Copy number variants
sequence that is at least one kilobase in length and polymorphic. This definition may vary slightly depending on the source.
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Single nucleotide polymorphism
A polymorphism in DNA sequence consisting of variation in a single base.
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Haplotype
- A set of DNA variations, or polymorphisms that tend to be inherited together. A haplotype can refer to a combination of alleles or to a set of single nucleotide polymorphisms
- (SNPs) found on the same chromosome.
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Genome-wide association study (GWAS)
- a case-control study in which genetic variation,
- often measured as SNP genotypes, is compared between people with a particular trait and unaffected individuals.
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Multifactorial Inheritance
The type of non-Mendelian inheritance shown by traits that are determined by a combination of multiple factors, genetic, and environmental.
It is also termed complex inheritance. In principle, multifactorial inheritance can be polygenic (involving many genes at different loci), but it always has to be influence by the environment.
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Linkage
Genes on the same chromosome are linked if they are transmitted together in meiosis more frequently than by chance
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Linkage Disequilibrium
The nonrandom association between two or more alleles such that certain combinations of alleles are more likely to occur together on a chromosome than other combinations of alleles
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Polygenic
Inheritance determined by many genes at different loci, with small additive effects. It is distinct from multifactorial inheritance in that environmental factors are not involved.
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