-
- The aliphatic category amino acids (besides glycine and alanine)
- Valine, Leucine, Isoleucine
- Side chains are relatively unreactive and their major feature is their increasing hydrophobicity as the chain lengthens
-
- Serine
- Hydroxylic side chain (left side)
- OH groups can serve as a hydrogen bonding site - important structurally
-
- Threonine
- Hydroxylic side chain (bottom left)
- OH groups can serve as a hydrogen bonding site - important structurally
-
- OH groups can serve as a hydrogen bonding site - important structurally
- OH is also a generally reactive moiety and can be used to attach groups
-
- OH groups can serve as a hydrogen bonding site - important structurally
- OH is also a generally reactive moiety and can be used to attach groups
- In this case, it gives it the ability to form covalent diester linkages with phosphates
- Common in the case of milk proteins
- Can play an important role in the stabilizing the 3D structure of a protein
-
- Aspartic acid
- pKb = 3.87 (COOH/COO-)
- Carboxylic amino acid
- Free carboxyl group is available which is capable of ionizing, can provide the protein with an overall negative charge depending on the pH
-
- Glutamic acid
- pKy = 4.27 (COOH/COO-)
- Carboxylic amino acidFree carboxyl group is available which is capable of ionizing, can provide the protein with an overall negative charge depending on the pH
- Beta carboxyl group of glutamic acid is 50% ionized at pH 3.87 while the gammaa COOH of glutamic acid is 50% ionized at 4.27
-
COO- charges increasing as pH rises
-
- Asparagine
- Amide amino acid
- Side chain of the amides of aspartic/glutamic acid do not ionize to any extent and are relatively unreactive
- Can play an important role in non-enzymatic browning (Maillard) reactions
-
- Glutamine
- Amide amino acid
- Side chain of the amides of aspartic/glutamic acid do not ionize to any extent and are relatively unreactive
- Can play an important role in non-enzymatic browning (Maillard) reactions
-
- Asparagine --------> Aspartic acid
- These amide AA are readily hydrolyzed under conditions of heat and/or acidic conditions to their corresponding acids
- Thus proteins containing these AA are susceptible to processes involving heat and acidity
-
- Lysine
- Has 2 amino groups, with the epsilon (e) group being one of the most reactive groups present in many protein systems
-
- Arginine
- Has very basic guanido group which has a pKa of 12.5
- Proteins with significant amounts of lysine and arginine tend to have high isoelectric points
-
- Histidine
- Imidazole group
- pKi (Imidazole) = 6.0 (NH2+/NH)
- Histidine "R" group is a weakly basic amino acid (50% ionized at pH 6)
-
- Phenylalanine
- One of the 3 aromatic amino acid
- All have an aromatic ring in their structure
- Hydrophobic
- Responsible for UV absorbance properties of most proteins at 280nm
-
- Tyrosine
- One of the 3 aromatic amino acid
- All have an aromatic ring in their structure
- Hydrophobic
- Responsible for UV absorbance properties of most proteins at 280nm
- Tyrosine also has an OH group which is reactive and capable of forming ester linkages with phosphate and is often used to conjugate proteins with sugars and polysaccharides
-
- Tryptophan
- One of the 3 aromatic amino acid
- All have an aromatic ring in their structure
- Hydrophobic
- Responsible for UV absorbance properties of most proteins at 280nm
- Tryptophan is considered to be somewhat basic, and its positive charge is suppressed only beyong pH 10 (NH2+/NH)
-
- Cysteine --------> Cystine
- eine = 1
- Cysteine is very reactive and can undergo oxidation-reduction reactions to form the dimer cystine or be reduced to cysteine
- There are 3 sulfur amino acids, cysteine, its dimer cystine, and methionine
-
- Methionine
- The other sulfur amino acid
- Sulfur group is not capable of ionizing but is relatively unstable and can decompose when heated to release hydrogen sulfide (H2S), a reaction that can also occur with cysteine and cystine
-
- Proline (NH2+ at pH < 7; NH at pH > 7)
- Imino acid - not true amino acid because does not contain a true amino group (NH2), but an imino (NH) group
- Disrupt natural tendency for proteins to form an alpha helix when they are incorporated into the protein chain
-
- Hydroxyproline (OH is reactive)
- (NH2+ at pH < 7; NH at pH > 7)
- Imino acid - not true amino acid because does not contain a true amino group (NH2), but an imino (NH) group
- Disrupt natural tendency for proteins to form an alpha helix when they are incorporated into the protein chain
-
Protein hydrolysates (acid or enzymatic hydrolysates) are used extensively as flavoring agents to provide a meaty or brothy flavor to soups, etc.)
-
- MSG is also associated with flavor development in some fruits and vegetables - like tomatoes
- This graph shows how glutamate levels in tomatoes rise during the ripening process to over 100mg per 100 mls of juice
-
- Formation of a peptide bond
- Special form of an amide bond where the alpha amino group of one AA is linked to the alpha carboxyl group of the next AA
-
- Trans C=O and NH
- If we link several amino acids together via a peptide bond, a specific structure develops
- The carboxyl oxygen and amino hydrogen of the peptide bond are always trans along the chain relative to each other
-
- If there was only one level of structure of proteins, they would all be long spaghetti-like molecules, however due to the natural bond angles, the singular L-amino acid configuration and steric hindrance of the 'R' groups
- The molecule is shortened and forms a spring-like alpha helix, the secondary level of structure
-
- Alpha helix secondary structure
- Due to the L-chiral form of AA, natural bond angles and steric hindrance - as the protein polymer elongates it tends to twist upon itself, producing a helical structure
-
- Alpha helix secondary structure
- Due to the L-chiral form of AA, natural bond angles and steric hindrance - as the protein polymer elongates it tends to twist upon itself, producing a helical structure
- Structure is stabilized by hydrogen bonding due to the repetitive proximity of the peptide carbonyl oxygen and the hydrogen of the peptide nitrogen
-
Structure is stabilized by hydrogen bonding due to the repetitive proximity of the peptide carbonyl oxygen and the hydrogen of the peptide nitrogen
|
|