-
autosomes
non-sex chromosomes, homologous
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sex chromosomes
one pair of the 23, two homologous in females and nonhomologous in males
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giemsa stain
uses banding techniques, unambiguously numbered chromosomes, and individual variation in ch. composition can be studied, and missing or dulication portions often resulting in disease can be identified
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karyotype
ordered display of chromosomes arranged according to size with homologous chromosomes paired together
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locus
area of a chromosome occupied by a gene
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alleles
different forms of a nucleotide sequence
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polymorphic
a locus that has two or more alleles that occur with an appreciable frequency in a population
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genotype
the composition of genes at a given locus
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phenotype
outward appearance of an individual which is the result of both genotype and environment
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heterozygote
effects of one allele mask those of another, dissimilar alleles at corresponding chromosome loci
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homozygous
identical alleles at corresponding chromosome loci
-
dominant
allele whose effects are observable
-
recessive
allele whose effects are hidden
-
codominance
heterozygote is distinguishable from both homozygotes
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mode of inheritance
pattern in which genetic disease is inherited through the generations of a family
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principle of segregation
homologous genes separate from one another during reproduction and that each each reoproductive cell carries only one of the homologous genes
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prinicple of independent assortment
hereditary transmission of one gene has no effect on the transmission of another
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chromosomal theory of inheritance
behavior of chrmomosomes doews essentially correspond to Mendel's laws
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pedigree
tool in analysis of modes of inheritance
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proband
the beginning individual of the pedigree
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recurrence risk
probability that subsequent children also will have the disease
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occurence risk
probability that a child will have the disease
-
consanguinity
mating of two related individuals and the offspring are said to be inbred
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sex-linked trait
conditions caused by genes located on the sex chromosomes
-
sex-influenced trait
occurs much more often in one sex than in the other
-
crossing over
new combinations of alleles can be formed
-
recombination
process of forming such new arrangements of alleles
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base pair substitution
one base pair is replaced by another but is subtle and is not observable as chromosome abberations
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silent substitution
amino acid change that does not occur
-
frameshift mutation
insertion of deletion of one or more base pairs to the CNA molecule, alters the resulting amino acid sequence
-
mutagens
large number of agents known to increase the frequency of mutations
-
spontaneous mutation
mutation that occurs in the absence of exposure to known mutagens
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mutational hot spots
certain areas of some chromosomes that have particularly high mutation rates
-
spontaneous abortions
50% of all recovered in 1st trimester have major chromosomal abberations
-
amniocentesis detection method
- 16 wks
- fetal fibroblasts cultured for 2-3 wks and karyotyped
- risk of loss 0.5%
- only for at risk mothers and fetuses
-
chorionic villus sampling
- 10 wk
- more cells collected and immediately sampled
- risk 1%
-
euploid
multiple of the normal number of chromosomes
-
polyploid
- more than the diploid number of ch
- some normal (liver, bronchial and epithelial) have polyploidy
-
triploidy
- three copies of each chromosome
- early in development and always lethal
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aneuploidy
somatic cell that does not contain a multiple of 23
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trisomy
- three copied of one chromosome
- may be survivable
- down's syndrome
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monosomy
- only one copy of a given ch
- lethal if autosome
- lethal if no x in male
- one x in female = turner's
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nondisjunction
- error in which homologous ch or sister ch fail to separate normally during meiosis or mitosis
- causes monosomy/trisomy
-
partial trisomy
- only an extra portion of a chromosome is present in each cell
- less severe
-
ch mosaics
body has two or more different cell lines, each of which has a different karyotype, nondisjunction in 1 line of cells but not the other
-
nondisjunction can happen when
meiosis 1 or 2
-
trisomoy X
- females having three X ch in each cell
- sterility, menstrual irregularity, mental
- more X's = more severe
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klinefelters syndrome
- 47, XXY
- male appearance
- sterile
- half develop female breasts
- small testes
- sparse body hair and high voice
- tall
- metal retardation
-
turners syndrome
- 45,X
- sterile females
- gonadal streaks instead of ovaries
- short and webbing of neck
- wide nipples
- carctation of aorta
- edema of feet
- reduced carrying angle at the elbow
- sparse body hair
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cri du chat deletion
- low birth weight
- mental ret
- microcephaly
- heart defects
- facial appearance and cat cry
-
duplication
- less serious than deletion
- same region of deletion causes mental ret but normal physical characterisitics
-
inversion
- balanced, no gain or loss of material
- inverted order after breaking
- no apparent physical effect
- position effect - change in gene's expression cause by its position
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translocation
- interchanging of genetic material between nonhomologous chromosomes
- lose no important genetic material
- carriers have no phenotypic differences but offspring will
- acute myelogenous leukemia
-
robertsonian translocation
- fusion of 2 long arms
- carriers lose no important genetic material
- offspring have serious duplications/deletions
-
reciprocal translocation
- breaks take place in two different chromosomes and material is exchanged
- carrier is normal
- offspring have problems
- fragile sites
-
areas on chromosomes that develop distinctive breaks and gaps
no apparent relationship to disease
-
-
fragile X syndrome
- fragile site on long arm of the X ch
- mental retardation
-
S&S of fragile X
- machroordinism
- mental retardation
- large ears
- prominent jaw
- high pitched jocular speech
-
Fragile X repeats
- normal 29
- 2X - man can carry
- 4X - man affected and can pass it on
- >700 - can see phenotype
-
genetic anticipation
worse in successive generations
-
huntington's disease
- autosomal dominant, hereditary
- high penetrance
- neuronal aggregation of defective proteins
- no cure and few treatments
- affective more in spermatogenesis
-
huntington's disease outcome number
- normal: 17-20
- 27-35: meiotically unstable
- 40-50: adult onset cases
- >50: juvenile onset
-
demographics of Huntington's
- inherited through males
- 1/10000 western countries
- 5/500000 prevalence
- all ethnic groups
- onset 30-50 yo
-
huntington's patho
- too many copies of CAG in huntingtin gene
- in exon 1
- gain-of-function, negative dominant
-
huntington's repeat aggregation
in caudate, putamen, and striatum
-
problems with huntington's
-
S&S of huntington's
- fidgetiness, restlessness
- chorea
- muscle spasms
- tics
- dystonic posturing
- falling
- difficulty swallowing/producing speech
- akinesia
-
cognitive S&S of huntington's
- altered organization
- slowed processing of information
- difficulty learning new things
- difficulty planning and prioritizing
- difficulty multi-tasking
- impairment of space perception
- difficulty organizing incoming and outgoing words
-
executive functions
- planning, working
- memory, attention, problem
- solving, verbal reasoning, inhibition, mental flexibility, multi-tasking,
- initiation and monitoring of actions
-
psychiatric S&S of huntington's
- depression
- apathy
- personality changes
- anxiety/irritability
- obsession with certain activities
- delirium/mania
- dementia
- denial
-
treating neurochemical symptoms of huntingtons
- gABA
- dopamine antagonists (haloperidol, phenothiazines)
-
spontaneous mutation
cause of disease in a child with no family history of the disease
-
achondroplasia
- autosomal dominant
- 7/8 spontateous - mutation of FGFR3
- NOT FROM HORMONES
-
penetrance
percentage of individuals with a specific genotype who also exhibit the phenotype
-
age-dependent penetrance example
- huntington's disease - does not show up until later in life 30-50
- therefore, penetrance increases with age
-
incomplete pentrance
gene is present but normal phenotype
-
obligate carrier
person with affected parent and affected child
-
expressitivity
- extent of variation in phenotype associated with a particular genotype
- penetrance can be complete but expressitivity will alter the severity of the phenotype
-
mechanisms altering expressitivity
- influenced by other genes
- environmental factors
- type of mutation
-
neurofibromatosis
- retinoblastoma gene
- cafe-au-lait or malignant neurofibromas, scoliosis, seizures, gliomas, meuromas, hypertension, learning disabilities
-
X inactivation
- turns off one X
- men have 0 normally
- women have 1 normally
- occurs at embryonic 7-14 days
- can be mom or dad but once inactivated, stable
-
prader-willi syndrome
genetic imprinting deletion of ch 15 on fathers side
-
angelman syndrome
genetic imprinting deletion of ch 15 on mothers side
-
S&S of PW
- short stature
- obesity
- hypogonadism
-
S&S of angelman
- mental retardation
- seizures
- ataxic gait
-
autosomal recessive
- need two copies to get the disease
- carries normal phenotype
- siblings will have but not parents
- 1/4 of 2 carrier parents will have
-
X-linked or mostly (dominant or recessive)
- recessive
- hemophilia A and fragile X
-
sex is determined by...
SRY gene
-
XX with SRY =
male phenotype
-
XY without SRY
Female phenotype
-
most common X-linked...
- DMD
- progressive muscle degeneration
- code for muscle protein and when mutated, doesn't work
-
cause of death in DMD pts
respiratory and cardiac failure
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male example trait of disease
male pattern baldness
-
female examplet trait of disease
autosomal dominant breat cancer
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linkage analysis
- see how often recombinations of certain genes take place
- crossing over during meiosis depends on linkage
-
in situ hybridization
- Lab technique to identify certain DNA
- segments/genes in a large piece of DNA/chromosome
-
risk factor
- Common measure of the effect of a specific risk factor
- incidence rate of disease among individuals
- exposed to a risk factor/” not exposed to risk factor
-
concordant
Both members of a twin pair share a trait
-
discordant
Members of a twin pair do not share the trait
-
epigenetic
the chemical modifications that the same DNA sequence can produce dramatically different phenotypes
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exon
sequences left to code for proteins
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genomic imprinting
epigenetic modification characerized by methylation and other changes
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intron
excised sequences that do not code for proteins
-
promoter site
sequence of DNA that specifies the beginning of a gene
-
recombination
process of forming new arrangements of alleles
-
sex-limited trait
can occur in only one of the sexes often because of anatomic differences
-
sex-linked inheritance
caused by genes on the sex chromosomes
-
somatic cell
include all cells other than gametes
-
transcription
process by which RNA is synthesized from a DNA template
-
translation
process by which RNA directs the sunthesis of a polypeptide
-
tumor-suppressor gene
normal function of its protein product is to regulate the cell cycle so that cells do not grow uncontrollably
-
complement receptor
found on many cells of the innate and acquired immune responses and some epithelial cells that recognize several fragments produced through activation of the complement system
-
contracture
excessive wound contraction leading to deformity
-
endogenous pyrogen
fever-causing cytokines released inside our body
-
epithelialization
process by which epithelial cells grow into the wound from surrounding healthy tissue
-
granuloma
body's attempt to wall off and isolate the infected area, may be formed if neutrophils and macrophages are unable to destroy microorganisms during the acute inflammatory response
-
histamine
vasoactive amine that causes temporary, rapid constriction of the large vessel walls and dilation of postcapillary venules, both of whih result in increased blooed flow into the microcirculation
-
innate immunity
natural epithelial barrier and inflammation confer innate resistance and protection
-
kinin system
plasma protein system that augments inflammation in several ways, pirmarily by producing bradykinin
-
native immunity
same as innate
-
natural killer cells
recognize and eliminate the cells infected with viruses as well as other abnormal host cells, specifically cancer cells
-
opsonin
molecules that rag microorganisms for destruction by cells of the inflammatory system
-
PAMP
pathogen associated molecular patterns, products of cellular damage, recognized by PRRs
-
PRR
pattern recognition receptors, recognize PAMP or molecular patterns on infectious agents
-
PMN
polymorphonuclear neutrophil, member of the granulocytic series, predominant phagocyte in early inflammatory site arriving within 6-12 hours after inital injury and ingest bacteria, dead cells, and celluar debris
-
serous
in early or mild inflammation, watery exudate with very few plasma proteins or leukocytes
-
TLR
toll-like receptor, expessed on surface of many cells that have direct and early contact with potential pathogenic microorganisms that recognize a large variety of PAMPs located on the microorganism's cell wall or surface
-
TGF
transforming growth factor stimulates fibroblasts entering the lesion to synthesize and secrete the collagen precursor procollagen
-
TNF
tumor necrosis factor secreted by macrophages in response to recognition of PAMPs by TLRs
-
active aquired immunity
produced by an individual after either natural exposure to an antigen or after immunization
-
adaptive immune response
called into action after the external barriers have been compromised and inflammation has been activated
-
antibody titer
lievel of circulating antibodies
-
antigen
foreign or non self substances associated with pathogens such as viruses, bacteria, fungi, parasites, but also found on noninfectious environmnetal agents such as pollens, foods, and bee venom and many others
-
antigen binding fragment
two identical fragmnets that retain the ability to bind antigen
-
antigen presentation
primary role of molcules of the MHC, antibody and cellular immune responses are dependent on this
-
APC
antigen presenting cell, manages some types of antigens, processes and expresses the antigen on the surface of the cell
-
B-lymphocyte
large population produced before birth that have the capacity to recognize almost any foreign antigen found in the environment
-
B-cell receptor
recognizes circulating antibody and antigen receptors on the surface of B lymphocytes
-
CD
cluster differentiation, accepted format for labeling a very large family of proteins found on the surface of many cells
-
central tolerance
lymphocytes with receptors against self-antigens have been eliminated
-
class switch
variable region of the antibody heavy chain is conserved and the light chain remains unchanged from that used in the BCR and therefore the antigenic specificity also remains unchanged
-
clonal selection
antigen selects those lymphocytes with compatible receptors, expands their population, and causes differentiation into antibody-secreting plasma cells or mature T cells
-
complementary determining region
CDR, subdivision of the variable region in the amino acid sequence localized into three areas
-
crystalline fragment
third fragment crystallized when separated from the Fab portion
-
epitope
precise portion of the antigen that is configured for recognition and binding
-
hapten
antigens that are too small to be immunogens by themselves but become immungenic in combination with larger molecules that function as carrier for the haptens
-
helper T cell
subpopulation of the T cell interacting with APC that facilitate immune responses
-
human leukocyte antigen
result of studies of transpantation, human MHC molecules,
-
MHC
major histocompatibility complex, essential set of recognition molecules, primary role is antigen presentation
-
memory cell
long-lived and capable of remembering the antigen and responding more rapidly and efficiently on subsequent exposure to the same antigen
-
memory t cell
help induce secondary cell-mediated immune responses
-
neutralization
inactivating or blocking the binding of an antigen to a receptor caused by antibodies
-
opsonization
necessary for efficient bacterial clearnace because many bacteria have an outer capsule that deters recognition by phagocytes unless it is coated with an antibody or complement protein
-
plasma cell
found in blood, secondary lymphoid organs, and some inflammatory sites; factory for antibody production and is dedicated to the secreation of a single class or subclass of antibody with one variable region and therefore specificity against one antigenic determinant
-
peripheral tolerance
part of the adaptive immune response, actively prevents their recognition by lymphocytes and antibodies
-
superantigen
activation of large populations of T lymphocytes, regardless of antigen specificity
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