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Electrons movement:
- oxidation/reduction or REDOX reactions
- Gains electron = reduction
- Loses electron = oxidation (reduction reactions)
Molecule reduced has higher energy
always occur together because every electron that is lost through oxidation is gained by reduction.
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Energy:
"capacity to do work"
Free energy: energy available to do work in any system.
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Thermodynamics:
- Science of energy exchanges/changes
- measured by heat... kilocalore kcal
- 1 kcal = 1000 calories
- 1 calorie is the heat required to raise the temp. of water 1 degree Celsius
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Energy can be in 1 or 2 states:
- 1) Kinectic: movement, motion
- 2) Potential: stored
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1st law of thermodynamics:
Energy can be changed from 1 form to another, but not created or destroyed it can only change from one form to another (potential to kenetic). Total amount of energy in universe stays constant.
- Form:
- Heat- Kinetic/potential
- Light- Kinectic
- Atomic energy- Potential
during each conversion energy is lost as heat.
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2nd law of thermodynamics
In energy conversions the potential energy of the final stage will be less than that of the initial state (some energy given off (most as heat)
- Disorder in universe (entropy) is continously increasing.
- DISORDER MORE LIKELY THAN ORDER
- Exergonic
- Endergonic
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Exergonic reactions: FIG. 4.6 and 6.5
Energy Given Off
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Endergonic: FIG. 4.6 and 6.5
Requires energy. Must be coupled to exergonic one
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Entropy/Enthalpy
Measure of disorder or randomness
C6H12O6 (glucose) ----> 6CO2 + 6H20 + energy in motochondria "catabolic reactions"
- H= heat content, potential energy, enthalpy
- ^H = change in H
- G= Gibbs free energy, available/usable energy
- ^G=^H-T^S
- T= Temperture
- S=Entrpopy
Usable energy is reduced due to increase in entropy
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Enzymes:
Involved in virtually all reactions (metabolism)
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Enzyme synthetic reactions
endergonic 'take in energy'
Anabolism
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Enzyme breakdown reactions
exergonic 'give off energy'
Catabolism
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Enzymes Structure:
- globular protein made of 1 or more chains
- -Primary, Secondary, Tertiary, Quat. Structures
Active Site and Substrate Molecules (FIG 6.8)
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Speed of Enzymes
1000 substrates molecules per second
Enzymes are acting as catalysts (speed up reactions, not used up)
BIO CATALYST SPECIFIC
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Regulation/ Control of Enzymes
- 1) production of enzyme
- 2) some enymes have control site (allosterksite)
- -End Point
- -Feedback
- 3)Substrate of molecule availble?
- 4) "cofactors" available
- 5) pH correct? optimum pH
- 6) Temp. correct
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"cofactors"
- Molecules that help enzymes (carry electrons)
- 1) some are organic (coenzmes)
- -vitamins/coenzymes B6,B12 (electron carriers)
- 2) inorganic molecules
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Etc. Enzymes
- -some are free in cytoplasm / or attached
- -some are single / or in groups
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Are there any non-protein (non-enzymes catalyst?
YES - RNA (ribozymes) help reactions
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ATP
- Energy Currency Molecule
- -endergonic reaction: J & K ----> L
- J,K,L = compounds
- J&K need enrergy of 10kcal/mol
- this reaction neds to be coupled to exorganig reaction
- ATP -----> ADP + P (phosphours group)
- -7.3kcal/mole released
needs 10kcal but only has 7.3 so need 2 ATP's to get to 10
ATP is constantly being made and used.
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Origin of specifin biochemical pathway:
- 1st organism (cells) -used organic molecules in H20 around them
- Example: R=simple comound, if R begins to run short selection for cell who could help make R begins =T+S....if T begins to run short...F+G is found to help (works backwards)
F+G ---> (T)+S----> R
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Gibbs Free Energy
^G = ^H-^T^S
- G= gibbs free energy, available energy
- T= Temp
- S= Entropy
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Allosteric Site
Part of enzyme away from active site, on/off switch
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Active Site
Region of enzyme surface, substrates bind, lowering activation energy required and fascilitates function.
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Feedback Inhibitor
Control mechanism, concentratration inhibits sythesis
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Inhibitors
Substance binds to enzyme and decreases its activity
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Activators
Binds to enzyme and increases activity
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Graph of Reactants/Products: Endergonic/Exergonic
- Endergonic- Products contain more energy than reactants
- Exergonic- products contain less energy than reactants
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Catalysts and activation graph:
lowers activation energy needed to initiate reaction (enzymes act as catlysts)
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Amount of energy required to break or form chemical bond:
Activation energy
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Excess energy released as:
Heat
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Structure of ATP:
- 1.) 5 Carbon Sugar ribose
- 2.) 2 carbon nitrogen
- 3.) chain of three phosphates
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