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matter
anything that has mass and occupies space
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states of matter
- solid - definite shape and volume
- liquid - definite volume, changeable shape
- gas - changeable shape and volume
- plasma
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energy
the capacity to do work or put matter into motion
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forms of energy (4)
- chemical - stored in bonds of chemical substances
- electrical - movement of charged particles
- mechanical - directly involved in moving matter
- radiant or electromagnetic - wavelike properties (eg. visible light, x-rays)
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element
- can't be broken down by ordinary chemical means
- unique physical and chemical properties
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atom
building blocks for elements
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major elements of the human body (4)
- oxygen
- carbon
- hydrogen
- nitrogen
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protons
- positive charge
- mass = 1 amu
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electrons
- negative charge
- negligible mass (0 amu)
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identifying elements
- atomic symbol - 1 or 2 letter chemical shorthand for each element
- atomic number - number of protons in the nucleus
- atomic mass - mass of protons + mass of neutrons
- atomic weight - avg of mass numbers of all isotopes of the element
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isotope
structural variations of elements that differ in the number of neutrons they contain
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molecule
2 or more atoms bonded together
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compound
- 2 or more different kinds of atoms bonded together
- can be separated only by breaking bonds unlike mixtures
- all are homogeneous
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mixture and the 3 types
- 2 or more components physically intermixed, no chemical bonding between components, can be separated physically
- solution
- colloid
- suspension
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solution
- homogeneous mixture
- solvent and solute
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colloid
- emulsion
- heterogeneous mixture
- particles don't settle out
- undergo sol-gel transformations
- think mayo or jello
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suspension
- heterogeneous mixture
- solutes tend to settle out
- think vinaigrette or blood
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chemical bonds
- electrons occupy up to seven electron shells around nucleus
- first shell is full with 2 electrons, all other shells are full at 8 (octet rule)
- outermost shell is valence shell
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chemically inert element
- stable and unreactive
- outermost shell is full
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ionic bond
- formed by transfer of electrons
- attraction of opposite charges results in ionic bonding
- ionic compounds form crystals instead of individual molecules
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anion
negative charge because it has gained electron(s)
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cation
- positive charge
- has lost electron(s)
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covalent bond
sharing of electrons
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nonpolar covalent bond
- equal sharing of electrons
- CO2
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polar covalent bond
- unequal sharing of electrons
- water
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hydrogen bonds
- attractive force between electropositive hydrogen of one molecule and an electronegative atom of another molecule
- common between dipoles like water
- also act as intramolecular bonds, holding large molecules in 3D shape
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chemical reactions
- synthesis - bonds are formed
- decomposition - bonds are broken
- exchange - bonds are made and broken
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inorganic compound
- do not contain carbon
- water, salts, many acids and bases
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organic compounds
- contain carbon
- usually large
- covalently bonded
- carbs, fats, proteins, nucleic acids
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properties of water (5)
- high heat capacity - prevents sudden temp changes
- high heat of vaporization - useful cooling mechanism
- polar solvent properties - dissolves and dissociates ionic substances, body's major transport medium
- reactivity - necessary part of hydrolysis and dehydration synthesis reactions
- cushioning - protects some organs from trauma eg. cerebrospinal fluid
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salts
- ionic compound that dissociates in water
- contains cations other than H+ and anions other than OH-
- ions conduct electrical currents in solution
- ions play specialized roles in body functions
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acids
- electrolyte
- proton donor (release H+ in solution)
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bases
- electrolyte
- proton acceptors (take up H+ from solution)
- bicarbonate ion (HCO3-) and ammonia (NH3) are important bases in the body
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pH concentration
- pH = the negative logarithm of H+ in moles per liter
- neutral - pH 7, eg water
- acidic - more H+, lower pH,
- alkaline - less H+ (or more OH-), higher pH
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pH change
- interferes with cell function
- can dmg living tissue
- slight change in pH can be fatal
- regulated by kidneys, lungs and buffers
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buffer
- mixture of compounds that resist pH changes
- convert strong (completely dissociated) acids or bases into weak (slightly dissociated) ones
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dehydration synthesis
water molecule leaves creating bond between 2 monomers
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hydrolysis
water molecule is added to polymer providing the necessary components for it to split into its monomers
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carbs
- sugars and starches
- contain C, H, and O
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3 classes of carbs
- monosaccharide
- disaccharide
- polysaccharide
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carb function
- major source of cellular fuel (glucose)
- structural molecules (ribose sugar in RNA)
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monosaccharides
simple sugars containing 3-7 C atoms (CH2O)n
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disaccharides
- double sugars
- too lg to pass through cell membranes
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polysaccharides
- polymers of simple sugard (starch, glycogen)
- not very soluble
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lipids
- contain C, H, O and sometimes P
- insoluble in water
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types of lipids
- triglycerides (neutral fats)
- phospholipids
- steroids
- eicosanoids
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triglycerides
- neutral
- composed of 3 fatty acids bonded to a glycerol molecule
- functions - energy storage, insulation, protection
- fatty acids - saturated and unsaturated
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phospholipids
- glycerol + 2 fatty acids and a phosphorus containing group
- head and tail regions have different properties
- cell membrane structure
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steroids
- interlocking 4-ring structure
- cholesterol, vitamin D, steroid hormones, bile salts
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eicosanoids
- derived from fatty acid in cell membranes
- prostaglandins
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proteins
- polymers of amino acids
- contain C, H, O, N and sometimes S and P
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peptide bond
covalent bond formed when carboxyl group of one molecule reacts with amino group of another molecule, releasing water molecule
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structural levels of proteins
- primary
- secondary (alpha helix or beta sheet)
- tertiary
- quaternary
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fibrous proteins
- strandlike, water insoluble, stable
- keratin, elastin, collagen
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globular proteins
- compact, spherical, water-soluble, sensitive to environmental change
- specific functional regions (active sites)
- antibodies, hormones, molecular chaperones, enzymes
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chaperonins
- ensure quick and accurate folding and association of proteins
- assist translocation of proteins and ions across membranes
- promote breakdown of dmg or denatured proteins
- help trigger immune response
- produced in response to stressful stimuli eg O2 deprivation
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enzymes
biological catalysts - lower activation energy speeding up reactions
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enzyme action
- substrates bind to active site
- energy is absorbed, bond is formed, water is released
- product is released
- product is dipeptide (peptide bond)
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nucleic acids
- DNA & RNA
- contain C, O, H, N and P
- built of nucleotides - N containing base, pentose sugar and a phosphate group
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4 bases of DNA
- adenine, guanine, cytosine and thymine
- RNA has uracil instead of thymine
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DNA
- double-stranded helical molecule in nucleus of cell
- provides instructions for protein synthesis
- replicates before cell division ensuring genetic continuity
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RNA
- single-stranded molecule mostly active outside of nucleus
- 3 kinds carry out the DNA orders for protein synthesis - mRNA, tRNA, and rRNA
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function of ATP
phosphorylation - terminal phosphates are enzymatically transferred to and energize other molecules, these molecules then perform cellular work using the phosphate bond energy
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